HL_4V61_098

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_098 not in the Motif Atlas

Geometric match to HL_7RQB_046

Geometric discrepancy: 0.1133

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V61|1|BC|A|57
4V61|1|BC|G|58
4V61|1|BC|U|59
4V61|1|BC|G|60
4V61|1|BC|A|61
4V61|1|BC|U|62

Current chains

Chain BC

4.8S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA