HL_4V61_100

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAUGCAAAGCG

Length

12 nucleotides

Bulged bases

4V61|1|AA|G|920

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_100 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2746

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V61|1|AA|C|911
4V61|1|AA|G|912
4V61|1|AA|A|913
4V61|1|AA|U|914
4V61|1|AA|G|915
4V61|1|AA|C|916
4V61|1|AA|A|917
4V61|1|AA|A|918
4V61|1|AA|A|919
4V61|1|AA|G|920
4V61|1|AA|C|921
4V61|1|AA|G|922

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

Ribosomal Protein S9

Chain AJ

Ribosomal Protein S10

Chain AN

Ribosomal Protein S14