HL_4V61_114

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

4V61|1|BA|U|1346, 4V61|1|BA|U|1350

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_114 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.3098

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4V61|1|BA|G|1345
4V61|1|BA|U|1346
4V61|1|BA|U|1347
4V61|1|BA|C|1348
4V61|1|BA|G|1349
4V61|1|BA|U|1350
4V61|1|BA|C|1351

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

Ribosomal Protein L17

Chain BU

Ribosomal Protein L22