HL_4V61_128

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AUGGGGCGU

Length

9 nucleotides

Bulged bases

4V61|1|BA|G|2267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_128 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2041

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V61|1|BA|A|2265
4V61|1|BA|U|2266
4V61|1|BA|G|2267
4V61|1|BA|G|2268
4V61|1|BA|G|2269
4V61|1|BA|G|2270
4V61|1|BA|C|2271
4V61|1|BA|G|2272
4V61|1|BA|U|2273

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

Ribosomal Protein L16

Chain BX

Ribosomal Protein L27