HL_4V63_003

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CCAGA*G

Length

6 nucleotides

Bulged bases

4V63|1|AA|C|103

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_003 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2917

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V63|1|AA|C|102|||C
4V63|1|AA|C|103
4V63|1|AA|A|103|||A
4V63|1|AA|G|103|||B
4V63|1|AA|A|103|||A
*
4V63|1|AA|G|103|||B

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA