HL_4V63_094

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V63|1|BA|A|2268, 4V63|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_094 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0979

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V63|1|BA|C|2264
4V63|1|BA|U|2265
4V63|1|BA|A|2266
4V63|1|BA|A|2267
4V63|1|BA|A|2268
4V63|1|BA|A|2269
4V63|1|BA|G|2270
4V63|1|BA|G|2271
4V63|1|BA|U|2272
4V63|1|BA|A|2273
4V63|1|BA|A|2274
4V63|1|BA|C|2275
4V63|1|BA|G|2276

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16