HL_4V63_234

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

4V63|1|DA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V63_234 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.3347

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V63|1|DA|G|2304
4V63|1|DA|A|2305
4V63|1|DA|C|2306
4V63|1|DA|G|2307
4V63|1|DA|G|2308
4V63|1|DA|A|2309
4V63|1|DA|A|2310
4V63|1|DA|A|2311
4V63|1|DA|U|2312

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DG

50S ribosomal protein L5