HL_4V64_045

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V64|1|BB|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_045 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.126

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V64|1|BB|G|327
4V64|1|BB|U|328
4V64|1|BB|G|329
4V64|1|BB|A|330
4V64|1|BB|C|331
4V64|1|BB|A|332
4V64|1|BB|G|333
4V64|1|BB|C|334
4V64|1|BB|C|335

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24