HL_4V64_080

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

4V64|1|BB|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_080 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.108

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V64|1|BB|C|1806
4V64|1|BB|G|1807
4V64|1|BB|A|1808
4V64|1|BB|A|1809
4V64|1|BB|A|1810
4V64|1|BB|G|1811

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28