HL_4V64_101

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

4V64|1|BB|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_101 not in the Motif Atlas

Geometric match to HL_5J7L_172

Geometric discrepancy: 0.2298

The information below is about HL_5J7L_172

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V64|1|BB|U|2796
4V64|1|BB|U|2797
4V64|1|BB|U|2798
4V64|1|BB|A|2799
4V64|1|BB|A|2800

Current chains

Chain BB

23S ribosomal RNA

Nearby chains