HL_4V64_163

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases (A, C, G, U)

958U, 961C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_163 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1404

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V64|1|DB|U|955
4V64|1|DB|G|956
4V64|1|DB|C|957
4V64|1|DB|U|958
4V64|1|DB|A|959
4V64|1|DB|A|960
4V64|1|DB|C|961
4V64|1|DB|G|962

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16