HL_4V64_168

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_168 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1442

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V64|1|DB|U|1222
4V64|1|DB|G|1223
4V64|1|DB|U|1224
4V64|1|DB|G|1225
4V64|1|DB|A|1226
4V64|1|DB|G|1227

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21