HL_4V64_191

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V64|1|DB|A|2268, 4V64|1|DB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_191 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1264

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V64|1|DB|C|2264
4V64|1|DB|U|2265
4V64|1|DB|A|2266
4V64|1|DB|A|2267
4V64|1|DB|A|2268
4V64|1|DB|G|2269
4V64|1|DB|A|2270
4V64|1|DB|G|2271
4V64|1|DB|U|2272
4V64|1|DB|A|2273
4V64|1|DB|A|2274
4V64|1|DB|C|2275
4V64|1|DB|G|2276

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27