HL_4V64_193

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_193 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1199

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V64|1|DB|U|2324
4V64|1|DB|G|2325
4V64|1|DB|C|2326
4V64|1|DB|A|2327
4V64|1|DB|A|2328
4V64|1|DB|U|2329
4V64|1|DB|G|2330
4V64|1|DB|G|2331

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L5

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27