HL_4V64_210

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V64_210 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3338

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V64|1|BB|G|2304
4V64|1|BB|U|2305
4V64|1|BB|C|2306
4V64|1|BB|G|2307
4V64|1|BB|G|2308
4V64|1|BB|A|2309
4V64|1|BB|C|2310
4V64|1|BB|A|2311
4V64|1|BB|U|2312

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5