HL_4V65_009

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CACAAUGGGCGCAAGCCUGAUG

Length

22 nucleotides

Bulged bases

4V65|1|A1|C|381, 4V65|1|A1|G|388

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_009 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3285

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V65|1|A1|C|370
4V65|1|A1|A|371
4V65|1|A1|C|372
4V65|1|A1|A|373
4V65|1|A1|A|374
4V65|1|A1|U|375
4V65|1|A1|G|376
4V65|1|A1|G|377
4V65|1|A1|G|378
4V65|1|A1|C|379
4V65|1|A1|G|380
4V65|1|A1|C|381
4V65|1|A1|A|382
4V65|1|A1|A|383
4V65|1|A1|G|384
4V65|1|A1|C|385
4V65|1|A1|C|386
4V65|1|A1|U|387
4V65|1|A1|G|388
4V65|1|A1|A|389
4V65|1|A1|U|390
4V65|1|A1|G|391

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S16