4V65 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V65_001 | No text annotation | ||
| HL_4V65_002 | GNRA | ||
| HL_4V65_003 | GNRA | ||
| HL_4V65_004 | UNCG | ||
| HL_4V65_005 | No text annotation | ||
| HL_4V65_102 | No text annotation | ||
| HL_4V65_006 | No text annotation | ||
| HL_4V65_007 | No text annotation | ||
| HL_4V65_103 | No text annotation | ||
| HL_4V65_008 | UNCG | ||
| HL_4V65_009 | No text annotation | ||
| HL_4V65_010 | No text annotation | ||
| HL_4V65_104 | No text annotation | ||
| HL_4V65_011 | No text annotation | ||
| HL_4V65_012 | No text annotation | ||
| HL_4V65_013 | GNRA-like with tWH | ||
| HL_4V65_014 | No text annotation | ||
| HL_4V65_015 | GNRA | ||
| HL_4V65_016 | No text annotation | ||
| HL_4V65_017 | No text annotation | ||
| HL_4V65_018 | GNRA | ||
| HL_4V65_019 | No text annotation | ||
| HL_4V65_020 | T-loop related | ||
| HL_4V65_021 | No text annotation | ||
| HL_4V65_022 | GNRA | ||
| HL_4V65_023 | GNRA | ||
| HL_4V65_024 | No text annotation | ||
| HL_4V65_025 | No text annotation | ||
| HL_4V65_026 | UNCG | ||
| HL_4V65_027 | tRNA D-loop | ||
| HL_4V65_028 | No text annotation | ||
| HL_4V65_029 | T-loop with 2 stacked bulged bases | ||
| HL_4V65_030 | tRNA D-loop | ||
| HL_4V65_031 | tRNA anticodon loop | ||
| HL_4V65_032 | T-loop with 2 stacked bulged bases | ||
| HL_4V65_033 | No text annotation | ||
| HL_4V65_034 | No text annotation | ||
| HL_4V65_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V65_036 | No text annotation | ||
| HL_4V65_037 | No text annotation | ||
| HL_4V65_105 | No text annotation | ||
| HL_4V65_038 | No text annotation | ||
| HL_4V65_039 | No text annotation | ||
| HL_4V65_106 | No text annotation | ||
| HL_4V65_040 | No text annotation | ||
| HL_4V65_095 | UNCG | ||
| HL_4V65_041 | No text annotation | ||
| HL_4V65_042 | No text annotation | ||
| HL_4V65_043 | No text annotation | ||
| HL_4V65_044 | No text annotation | ||
| HL_4V65_107 | No text annotation | ||
| HL_4V65_045 | tRNA D-loop | ||
| HL_4V65_046 | T-loop with unstacked turn | ||
| HL_4V65_047 | No text annotation | ||
| HL_4V65_048 | No text annotation | ||
| HL_4V65_096 | Pseudoknot geometry | ||
| HL_4V65_049 | GNRA | ||
| HL_4V65_050 | No text annotation | ||
| HL_4V65_051 | No text annotation | ||
| HL_4V65_052 | No text annotation | ||
| HL_4V65_097 | GNRA | ||
| HL_4V65_053 | No text annotation | ||
| HL_4V65_098 | No text annotation | ||
| HL_4V65_099 | No text annotation | ||
| HL_4V65_054 | No text annotation | ||
| HL_4V65_055 | No text annotation | ||
| HL_4V65_056 | No text annotation | ||
| HL_4V65_057 | GNRA | ||
| HL_4V65_058 | No text annotation | ||
| HL_4V65_108 | No text annotation | ||
| HL_4V65_059 | No text annotation | ||
| HL_4V65_060 | GNRA wlth tandem sheared | ||
| HL_4V65_061 | No text annotation | ||
| HL_4V65_062 | GNRA | ||
| HL_4V65_063 | T-loop with 2 stacked bulged bases | ||
| HL_4V65_064 | No text annotation | ||
| HL_4V65_065 | GNRA | ||
| HL_4V65_100 | No text annotation | ||
| HL_4V65_066 | No text annotation | ||
| HL_4V65_067 | Pseudoknot geometry with 3' bulge | ||
| HL_4V65_068 | UNCG | ||
| HL_4V65_069 | Mini UNCG | ||
| HL_4V65_070 | No text annotation | ||
| HL_4V65_071 | No text annotation | ||
| HL_4V65_072 | No text annotation | ||
| HL_4V65_073 | No text annotation | ||
| HL_4V65_074 | No text annotation | ||
| HL_4V65_075 | GNRA variation | ||
| HL_4V65_076 | No text annotation | ||
| HL_4V65_077 | No text annotation | ||
| HL_4V65_078 | No text annotation | ||
| HL_4V65_109 | No text annotation | ||
| HL_4V65_079 | No text annotation | ||
| HL_4V65_080 | No text annotation | ||
| HL_4V65_081 | No text annotation | ||
| HL_4V65_082 | No text annotation | ||
| HL_4V65_083 | No text annotation | ||
| HL_4V65_084 | GNRA | ||
| HL_4V65_085 | No text annotation | ||
| HL_4V65_086 | No text annotation | ||
| HL_4V65_087 | GNRA | ||
| HL_4V65_110 | No text annotation | ||
| HL_4V65_088 | No text annotation | ||
| HL_4V65_089 | No text annotation | ||
| HL_4V65_101 | No text annotation | ||
| HL_4V65_090 | GNRA | ||
| HL_4V65_091 | No text annotation | ||
| HL_4V65_092 | No text annotation | ||
| HL_4V65_093 | Mini UNCG | ||
| HL_4V65_111 | No text annotation | ||
| HL_4V65_094 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V65_157 | Single bulged A | ||
| IL_4V65_001 | Isolated non-canonical cWW pair | ||
| IL_4V65_002 | No text annotation | ||
| IL_4V65_003 | No text annotation | ||
| IL_4V65_158 | No text annotation | ||
| IL_4V65_004 | No text annotation | ||
| IL_4V65_005 | Tandem non-canonical cWW pairs | ||
| IL_4V65_159 | Single bulged G | ||
| IL_4V65_127 | No text annotation | ||
| IL_4V65_006 | Isolated non-canonical cWW pair | ||
| IL_4V65_128 | No text annotation | ||
| IL_4V65_007 | No text annotation | ||
| IL_4V65_008 | Isolated cWH basepair | ||
| IL_4V65_009 | tWH-tWH-tHW-tHW | ||
| IL_4V65_010 | No text annotation | ||
| IL_4V65_011 | No text annotation | ||
| IL_4V65_160 | Kink-turn with non-sequential stacking | ||
| IL_4V65_161 | No text annotation | ||
| IL_4V65_012 | No text annotation | ||
| IL_4V65_013 | No text annotation | ||
| IL_4V65_129 | No text annotation | ||
| IL_4V65_014 | No text annotation | ||
| IL_4V65_015 | Single bulged U | ||
| IL_4V65_016 | No text annotation | ||
| IL_4V65_017 | No text annotation | ||
| IL_4V65_018 | No text annotation | ||
| IL_4V65_019 | Single stack bend | ||
| IL_4V65_020 | Single stack bend | ||
| IL_4V65_021 | Single bulged A | ||
| IL_4V65_162 | No text annotation | ||
| IL_4V65_022 | No text annotation | ||
| IL_4V65_023 | No text annotation | ||
| IL_4V65_130 | Kink-turn related | ||
| IL_4V65_024 | Major groove platform | ||
| IL_4V65_025 | Major groove minor groove platform; mini C-loop | ||
| IL_4V65_026 | No text annotation | ||
| IL_4V65_027 | No text annotation | ||
| IL_4V65_028 | Single stack bend | ||
| IL_4V65_029 | No text annotation | ||
| IL_4V65_163 | No text annotation | ||
| IL_4V65_131 | Isolated non-canonical cWW pair | ||
| IL_4V65_164 | Single stack bend | ||
| IL_4V65_132 | No text annotation | ||
| IL_4V65_030 | No text annotation | ||
| IL_4V65_165 | Kink-turn | ||
| IL_4V65_031 | No text annotation | ||
| IL_4V65_133 | No text annotation | ||
| IL_4V65_032 | No text annotation | ||
| IL_4V65_134 | No text annotation | ||
| IL_4V65_033 | tSH-tHW-tHS | ||
| IL_4V65_166 | No text annotation | ||
| IL_4V65_034 | No text annotation | ||
| IL_4V65_035 | No text annotation | ||
| IL_4V65_036 | Single stack bend | ||
| IL_4V65_135 | No text annotation | ||
| IL_4V65_167 | No text annotation | ||
| IL_4V65_037 | No text annotation | ||
| IL_4V65_038 | Isolated non-canonical cWW pair | ||
| IL_4V65_039 | Single bulged U | ||
| IL_4V65_040 | No text annotation | ||
| IL_4V65_041 | No text annotation | ||
| IL_4V65_136 | No text annotation | ||
| IL_4V65_168 | No text annotation | ||
| IL_4V65_169 | No text annotation | ||
| IL_4V65_042 | Minor groove platform | ||
| IL_4V65_137 | No text annotation | ||
| IL_4V65_138 | No text annotation | ||
| IL_4V65_043 | No text annotation | ||
| IL_4V65_044 | Double sheared with non-canonical cWW | ||
| IL_4V65_045 | No text annotation | ||
| IL_4V65_139 | No text annotation | ||
| IL_4V65_046 | No text annotation | ||
| IL_4V65_140 | No text annotation | ||
| IL_4V65_141 | No text annotation | ||
| IL_4V65_170 | No text annotation | ||
| IL_4V65_047 | No text annotation | ||
| IL_4V65_142 | No text annotation | ||
| IL_4V65_171 | No text annotation | ||
| IL_4V65_048 | No text annotation | ||
| IL_4V65_049 | Major groove intercalation | ||
| IL_4V65_172 | No text annotation | ||
| IL_4V65_050 | No text annotation | ||
| IL_4V65_051 | Minor groove platform | ||
| IL_4V65_052 | Symmetric double minor groove platform | ||
| IL_4V65_143 | Single bulged A | ||
| IL_4V65_053 | Isolated non-canonical cWW pair | ||
| IL_4V65_054 | No text annotation | ||
| IL_4V65_055 | No text annotation | ||
| IL_4V65_056 | No text annotation | ||
| IL_4V65_173 | No text annotation | ||
| IL_4V65_057 | Other IL | ||
| IL_4V65_144 | Single stack bend | ||
| IL_4V65_145 | Single stack bend | ||
| IL_4V65_058 | No text annotation | ||
| IL_4V65_059 | Single stack bend | ||
| IL_4V65_060 | No text annotation | ||
| IL_4V65_061 | No text annotation | ||
| IL_4V65_062 | Isolated non-canonical cWW pair | ||
| IL_4V65_063 | No text annotation | ||
| IL_4V65_146 | No text annotation | ||
| IL_4V65_064 | No text annotation | ||
| IL_4V65_065 | No text annotation | ||
| IL_4V65_066 | No text annotation | ||
| IL_4V65_067 | Triple sheared with non-canonical cWW | ||
| IL_4V65_068 | No text annotation | ||
| IL_4V65_069 | No text annotation | ||
| IL_4V65_174 | Single stack bend | ||
| IL_4V65_070 | No text annotation | ||
| IL_4V65_147 | No text annotation | ||
| IL_4V65_071 | No text annotation | ||
| IL_4V65_072 | Isolated non-canonical cWW with bulges | ||
| IL_4V65_073 | C-loop | ||
| IL_4V65_074 | No text annotation | ||
| IL_4V65_075 | No text annotation | ||
| IL_4V65_175 | No text annotation | ||
| IL_4V65_076 | Single bulged A | ||
| IL_4V65_077 | No text annotation | ||
| IL_4V65_078 | No text annotation | ||
| IL_4V65_079 | No text annotation | ||
| IL_4V65_080 | Isolated non-canonical cWW pair | ||
| IL_4V65_081 | Tandem non-canonical cWW pairs | ||
| IL_4V65_082 | Kink-turn | ||
| IL_4V65_083 | No text annotation | ||
| IL_4V65_084 | No text annotation | ||
| IL_4V65_085 | No text annotation | ||
| IL_4V65_176 | No text annotation | ||
| IL_4V65_177 | No text annotation | ||
| IL_4V65_086 | No text annotation | ||
| IL_4V65_087 | tSH-tHW-tHS | ||
| IL_4V65_088 | No text annotation | ||
| IL_4V65_089 | UAA/GAN | ||
| IL_4V65_090 | No text annotation | ||
| IL_4V65_178 | No text annotation | ||
| IL_4V65_091 | tSH-tHW | ||
| IL_4V65_092 | No text annotation | ||
| IL_4V65_093 | No text annotation | ||
| IL_4V65_094 | No text annotation | ||
| IL_4V65_095 | Single bulged A | ||
| IL_4V65_096 | UAA/GAN variation | ||
| IL_4V65_097 | Single stack bend | ||
| IL_4V65_148 | No text annotation | ||
| IL_4V65_098 | No text annotation | ||
| IL_4V65_099 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V65_149 | No text annotation | ||
| IL_4V65_100 | Triple sheared | ||
| IL_4V65_101 | Single bulged C | ||
| IL_4V65_102 | No text annotation | ||
| IL_4V65_103 | Single stack bend | ||
| IL_4V65_150 | No text annotation | ||
| IL_4V65_179 | No text annotation | ||
| IL_4V65_104 | UAA/GAN related | ||
| IL_4V65_180 | Tandem non-canonical cWW pairs | ||
| IL_4V65_105 | Other IL | ||
| IL_4V65_106 | No text annotation | ||
| IL_4V65_151 | No text annotation | ||
| IL_4V65_107 | No text annotation | ||
| IL_4V65_108 | No text annotation | ||
| IL_4V65_152 | No text annotation | ||
| IL_4V65_109 | No text annotation | ||
| IL_4V65_110 | Single bulged G, near cWW | ||
| IL_4V65_181 | Single bulged U | ||
| IL_4V65_153 | Isolated non-canonical cWW pair | ||
| IL_4V65_154 | Tandem non-canonical cWW pairs | ||
| IL_4V65_111 | No text annotation | ||
| IL_4V65_112 | Single stack bend | ||
| IL_4V65_113 | Double sheared | ||
| IL_4V65_114 | No text annotation | ||
| IL_4V65_155 | No text annotation | ||
| IL_4V65_115 | No text annotation | ||
| IL_4V65_156 | No text annotation | ||
| IL_4V65_182 | No text annotation | ||
| IL_4V65_116 | No text annotation | ||
| IL_4V65_117 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V65_118 | No text annotation | ||
| IL_4V65_119 | No text annotation | ||
| IL_4V65_183 | No text annotation | ||
| IL_4V65_120 | No text annotation | ||
| IL_4V65_121 | UAA/GAN with extra cWW | ||
| IL_4V65_122 | No text annotation | ||
| IL_4V65_184 | No text annotation | ||
| IL_4V65_123 | No text annotation | ||
| IL_4V65_124 | No text annotation | ||
| IL_4V65_185 | No text annotation | ||
| IL_4V65_125 | No text annotation | ||
| IL_4V65_126 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V65_028 | No text annotation | ||
| J3_4V65_009 | No text annotation | ||
| J3_4V65_001 | No text annotation | ||
| J3_4V65_010 | No text annotation | ||
| J3_4V65_002 | No text annotation | ||
| J3_4V65_011 | No text annotation | ||
| J3_4V65_012 | No text annotation | ||
| J3_4V65_013 | No text annotation | ||
| J3_4V65_014 | No text annotation | ||
| J3_4V65_015 | No text annotation | ||
| J3_4V65_029 | No text annotation | ||
| J3_4V65_003 | No text annotation | ||
| J3_4V65_016 | No text annotation | ||
| J3_4V65_030 | No text annotation | ||
| J3_4V65_017 | No text annotation | ||
| J3_4V65_031 | No text annotation | ||
| J3_4V65_018 | No text annotation | ||
| J3_4V65_032 | No text annotation | ||
| J3_4V65_019 | No text annotation | ||
| J3_4V65_033 | No text annotation | ||
| J3_4V65_020 | No text annotation | ||
| J3_4V65_021 | No text annotation | ||
| J3_4V65_022 | No text annotation | ||
| J3_4V65_023 | No text annotation | ||
| J3_4V65_004 | No text annotation | ||
| J3_4V65_005 | No text annotation | ||
| J3_4V65_034 | No text annotation | ||
| J3_4V65_024 | No text annotation | ||
| J3_4V65_025 | No text annotation | ||
| J3_4V65_006 | No text annotation | ||
| J3_4V65_035 | No text annotation | ||
| J3_4V65_026 | No text annotation | ||
| J3_4V65_027 | No text annotation | ||
| J3_4V65_007 | No text annotation | ||
| J3_4V65_036 | No text annotation | ||
| J3_4V65_008 | No text annotation | ||
| J3_4V65_037 | No text annotation | ||
| J4_4V65_001 | No text annotation | ||
| J4_4V65_002 | No text annotation | ||
| J4_4V65_003 | No text annotation | ||
| J4_4V65_004 | tRNA junction | ||
| J4_4V65_005 | tRNA junction | ||
| J4_4V65_014 | tRNA junction | ||
| J4_4V65_006 | No text annotation | ||
| J4_4V65_007 | No text annotation | ||
| J4_4V65_008 | No text annotation | ||
| J4_4V65_009 | No text annotation | ||
| J4_4V65_015 | No text annotation | ||
| J4_4V65_010 | No text annotation | ||
| J4_4V65_011 | No text annotation | ||
| J4_4V65_016 | No text annotation | ||
| J4_4V65_012 | No text annotation | ||
| J4_4V65_013 | No text annotation | ||
| J5_4V65_001 | No text annotation | ||
| J5_4V65_002 | No text annotation | ||
| J5_4V65_010 | No text annotation | ||
| J5_4V65_011 | No text annotation | ||
| J5_4V65_012 | No text annotation | ||
| J5_4V65_003 | No text annotation | ||
| J5_4V65_013 | No text annotation | ||
| J5_4V65_004 | No text annotation | ||
| J5_4V65_014 | No text annotation | ||
| J5_4V65_005 | No text annotation | ||
| J5_4V65_006 | No text annotation | ||
| J5_4V65_007 | No text annotation | ||
| J5_4V65_008 | No text annotation | ||
| J5_4V65_015 | No text annotation | ||
| J5_4V65_016 | No text annotation | ||
| J5_4V65_009 | No text annotation | ||
| J6_4V65_003 | No text annotation | ||
| J6_4V65_001 | No text annotation | ||
| J6_4V65_004 | No text annotation | ||
| J6_4V65_002 | No text annotation | ||
| J7_4V65_001 | No text annotation | ||
| J7_4V65_002 | No text annotation | ||
| J13_4V65_001 | No text annotation | ||
| J13_4V65_002 | No text annotation |
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