RNA 3D Hub //

4V65 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V65_0011/A1/83:86No text annotation
geometric
HL_7RQB_009
NA
HL_4V65_0021/A1/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_4V65_0031/A1/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_4V65_0041/A1/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_4V65_1021/A1/258:268No text annotation
HL_4V65_0061/A1/296:302No text annotation
HL_4V65_1031/A1/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V65_0081/A1/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V65_0091/A1/370:391No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_4V65_1041/A1/419:424No text annotation
HL_4V65_0111/A1/462:470No text annotation
HL_4V65_0121/A1/521:528No text annotation
HL_4V65_0131/A1/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_10453.3
HL_4V65_0141/A1/688:699No text annotation
HL_4V65_0151/A1/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_4V65_0161/A1/783:799No text annotation
HL_4V65_0171/A1/840:846No text annotation
HL_4V65_0181/A1/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_4V65_0191/A1/1028:1033No text annotation
geometric
HL_5TBW_044
NA
HL_4V65_0201/A1/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V65_0211/A1/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_4V65_0221/A1/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.8
HL_4V65_0231/A1/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_4V65_0241/A1/1313:1324No text annotation
HL_4V65_0251/A1/1352:1370No text annotation
HL_4V65_0261/A1/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V65_0271/AA/13:22tRNA D-loop
homologous
HL_4V90_032
HL_20811.4
HL_4V65_0281/AA/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_4V65_0291/AA/53:61T-loop with 2 stacked bulged bases
homologous
HL_6UGG_006
HL_28252.9
HL_4V65_0301/AE/13:22tRNA D-loop
homologous
HL_4V90_032
HL_20811.4
HL_4V65_0311/AE/31:39tRNA anticodon loop
homologous
HL_6UFM_002
HL_06059.7
HL_4V65_0321/AE/53:61T-loop with 2 stacked bulged bases
homologous
HL_6UFM_003
HL_28252.9
HL_4V65_0331/AP/13:22No text annotation
homologous
HL_6PMO_003
NA
HL_4V65_0341/AP/30:40No text annotation
homologous
HL_5IB8_208
HL_36684.4
HL_4V65_0351/AP/53:61T-loop with 2 stacked bulged bases
homologous
HL_5WWT_002
HL_28252.9
HL_4V65_0361/BA/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_4V65_1051/BA/85:91No text annotation
HL_4V65_0381/BB/87:94No text annotation
HL_4V65_1061/BB/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_4V65_0951/BB/137:142UNCG
geometric
HL_5J7L_005
HL_34617.5
HL_4V65_0411/BB/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4V65_0421/BB/188:209No text annotation
HL_4V65_0431/BB/225:230No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_4V65_1071/BB/239:258No text annotation
HL_4V65_0451/BB/304:313tRNA D-loop
geometric
HL_7UQ6_001
HL_20811.4
HL_4V65_0461/BB/327:335T-loop with unstacked turn
homologous
HL_9DFE_011
HL_27670.2
HL_4V65_0471/BB/380:394No text annotation
geometric
HL_8C3A_054
NA
HL_4V65_0961/BB/410:417Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.3
HL_4V65_0491/BB/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_4V65_0501/BB/543:550No text annotation
HL_4V65_0511/BB/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_4V65_0971/BB/629:634GNRA
homologous
HL_4WF9_020
HL_37824.8
HL_4V65_0981/BB/640:648No text annotation
HL_4V65_0541/BB/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V65_0551/BB/778:787No text annotation
HL_4V65_0561/BB/822:835No text annotation
HL_4V65_0571/BB/885:891GNRA
geometric
HL_3P22_001
HL_37824.8
HL_4V65_1081/BB/953:964No text annotation
HL_4V65_0591/BB/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_4V65_0601/BB/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4V65_0611/BB/1172:1177No text annotation
geometric
HL_8C3A_018
NA
HL_4V65_0621/BB/1222:1227GNRA
homologous
HL_7A0S_031
HL_37824.8
HL_4V65_0631/BB/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_28252.9
HL_4V65_0641/BB/1319:1333No text annotation
HL_4V65_0651/BB/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_4V65_1001/BB/1388:1399No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_4V65_0661/BB/1450:1461No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_4V65_0671/BB/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_4V65_0681/BB/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4V65_0691/BB/1565:1568Mini UNCG
homologous
HL_4WF9_037
HL_48778.2
HL_4V65_0701/BB/1627:1639No text annotation
HL_4V65_0711/BB/1691:1696No text annotation
HL_4V65_0721/BB/1728:1731No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_4V65_0731/BB/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V65_0741/BB/1797:1822No text annotation
HL_4V65_0751/BB/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_4V65_0761/BB/1910:1920No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_4V65_0771/BB/1935:1967No text annotation
HL_4V65_1091/BB/2143:2148No text annotation
geometric
HL_8CRE_052
HL_75660.5
HL_4V65_0791/BB/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4V65_0801/BB/2248:2256No text annotation
HL_4V65_0811/BB/2264:2276No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_4V65_0821/BB/2304:2313No text annotation
HL_4V65_0831/BB/2355:2362No text annotation
geometric
HL_4V88_198
NA
HL_4V65_0841/BB/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_4V65_0851/BB/2404:2413No text annotation
homologous
HL_7A0S_058
HL_53454.2
HL_4V65_0861/BB/2466:2484No text annotation
HL_4V65_0871/BB/2528:2535GNRA
homologous
HL_3MOJ_001
HL_37824.8
HL_4V65_1101/BB/2547:2562No text annotation
HL_4V65_0881/BB/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_4V65_1011/BB/2589:2605No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_4V65_0901/BB/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.8
HL_4V65_0911/BB/2700:2707No text annotation
HL_4V65_0921/BB/2745:2759No text annotation
homologous
HL_4WF9_062
HL_74055.2
HL_4V65_0931/BB/2796:2800Mini UNCG
geometric
HL_4WF9_037
HL_48778.2
HL_4V65_1111/BB/2817:2829No text annotation
HL_4V65_0941/BB/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_4V65_005No text annotation
HL_4V65_007No text annotation
HL_4V65_010No text annotation
HL_4V65_037No text annotation
HL_4V65_039No text annotation
HL_4V65_040No text annotation
HL_4V65_044No text annotation
HL_4V65_048No text annotation
HL_4V65_052No text annotation
HL_4V65_053No text annotation
HL_4V65_099No text annotation
HL_4V65_058No text annotation
HL_4V65_078No text annotation
HL_4V65_089No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V65_1571/A1/44:45,
1/A1/396:398		Single bulged A
homologous
IL_6CZR_114
NA
IL_4V65_0021/A1/47:52,
1/A1/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_4V65_1581/A1/53:57,
1/A1/355:358		No text annotation
IL_4V65_0041/A1/63:73,
1/A1/97:104		No text annotation
IL_4V65_1591/A1/75:76,
1/A1/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.14
IL_4V65_0061/A1/128:131,
1/A1/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V65_1281/A1/128:136,
1/A1/227:233		No text annotation
IL_4V65_0071/A1/131:136,
1/A1/227:231		No text annotation
IL_4V65_0081/A1/144:146,
1/A1/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_4V65_0091/A1/147:153,
1/A1/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_4V65_0101/A1/201:206,
1/A1/213:216		No text annotation
IL_4V65_1601/A1/242:247,
1/A1/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_4V65_1611/A1/249:252,
1/A1/274:275		No text annotation
homologous
IL_6CZR_405
NA
IL_4V65_0131/A1/292:293,
1/A1/304:308		No text annotation
IL_4V65_1291/A1/292:296,
1/A1/302:308		No text annotation
IL_4V65_0141/A1/293:296,
1/A1/302:304		No text annotation
IL_4V65_0151/A1/367:369,
1/A1/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_4V65_0161/A1/409:417,
1/A1/426:433		No text annotation
IL_4V65_0171/A1/440:442,
1/A1/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_4V65_0181/A1/446:453,
1/A1/480:488		No text annotation
IL_4V65_0191/A1/454:455,
1/A1/477:479		Single stack bend
geometric
IL_5TBW_375
NA
IL_4V65_0201/A1/458:459,
1/A1/472:474		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_4V65_0211/A1/460:462,
1/A1/470:471		Single bulged A
geometric
IL_5FJC_001
IL_31462.7
IL_4V65_1621/A1/501:511,
1/A1/540:544		No text annotation
IL_4V65_1301/A1/515:521,
1/A1/528:536		Kink-turn related
homologous
IL_6CZR_133
NA
IL_4V65_0241/A1/594:596,
1/A1/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_4V65_0251/A1/597:598,
1/A1/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V65_0261/A1/605:612,
1/A1/628:633		No text annotation
IL_4V65_0271/A1/654:655,
1/A1/751:754		No text annotation
IL_4V65_0281/A1/658:659,
1/A1/746:748		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_4V65_1631/A1/661:667,
1/A1/739:744		No text annotation
IL_4V65_1641/A1/678:679,
1/A1/711:713		Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_4V65_1651/A1/683:688,
1/A1/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V65_1331/A1/772:774,
1/A1/806:807		No text annotation
IL_4V65_0321/A1/775:779,
1/A1/803:805		No text annotation
IL_4V65_1341/A1/775:783,
1/A1/799:805		No text annotation
IL_4V65_0331/A1/779:783,
1/A1/799:803		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_4V65_1661/A1/824:830,
1/A1/856:876		No text annotation
IL_4V65_0351/A1/933:936,
1/A1/1379:1384		No text annotation
homologous
IL_6CZR_149
NA
IL_4V65_0361/A1/940:942,
1/A1/1342:1343		Single stack bend
geometric
IL_5TBW_375
NA
IL_4V65_1671/A1/950:984,
1/A1/1221:1231		No text annotation
IL_4V65_0371/A1/1047:1056,
1/A1/1204:1210		No text annotation
IL_4V65_0381/A1/1057:1059,
1/A1/1198:1203		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_4V65_0391/A1/1060:1061,
1/A1/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_4V65_0401/A1/1061:1063,
1/A1/1193:1195		No text annotation
IL_4V65_1681/A1/1124:1129,
1/A1/1143:1149		No text annotation
IL_4V65_1691/A1/1124:1132,
1/A1/1142:1149		No text annotation
IL_4V65_0421/A1/1129:1132,
1/A1/1142:1143		Minor groove platform
geometric
IL_6CZR_155
NA
IL_4V65_1371/A1/1158:1161,
1/A1/1175:1181		No text annotation
IL_4V65_1381/A1/1247:1255,
1/A1/1282:1290		No text annotation
IL_4V65_0431/A1/1255:1258,
1/A1/1277:1282		No text annotation
IL_4V65_0441/A1/1259:1263,
1/A1/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
IL_17948.2
IL_4V65_0451/A1/1404:1407,
1/A1/1494:1497		No text annotation
IL_4V65_1391/A1/1404:1411,
1/A1/1489:1497		No text annotation
IL_4V65_0461/A1/1407:1411,
1/A1/1489:1494		No text annotation
IL_4V65_1401/A1/1411:1421,
1/A1/1479:1489		No text annotation
IL_4V65_1411/A1/1423:1432,
1/A1/1467:1477		No text annotation
IL_4V65_1701/A1/1432:1435,
1/A1/1466:1467		No text annotation
IL_4V65_1711/A1/1439:1448,
1/A1/1455:1462		No text annotation
IL_4V65_0481/A1/1440:1448,
1/A1/1455:1461		No text annotation
IL_4V65_0491/BA/17:18,
1/BA/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_4V65_1721/BA/23:28,
1/BA/56:60		No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_4V65_0511/BA/30:31,
1/BA/51:54		Minor groove platform
geometric
IL_3IWN_005
IL_15052.4
IL_4V65_0521/BA/34:38,
1/BA/44:48		Symmetric double minor groove platform
homologous
IL_5J7L_358
IL_58103.11
IL_4V65_1431/BB/36:37,
1/BB/442:444		Single bulged A
homologous
IL_5J7L_246
IL_31462.7
IL_4V65_0541/BB/40:44,
1/BB/434:439		No text annotation
IL_4V65_0551/BB/55:76,
1/BB/110:115		No text annotation
IL_4V65_1731/BB/79:85,
1/BB/97:107		No text annotation
IL_4V65_1441/BB/86:87,
1/BB/94:96		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_4V65_1451/BB/183:184,
1/BB/212:214		Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_4V65_0591/BB/186:188,
1/BB/209:210		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_4V65_0601/BB/269:271,
1/BB/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_4V65_0611/BB/274:281,
1/BB/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_4V65_1461/BB/291:295,
1/BB/343:349		No text annotation
IL_4V65_0641/BB/481:484,
1/BB/496:509		No text annotation
homologous
IL_4WF9_015
IL_81516.2
IL_4V65_0651/BB/605:610,
1/BB/618:624		No text annotation
IL_4V65_0661/BB/696:703,
1/BB/728:767		No text annotation
IL_4V65_0671/BB/703:708,
1/BB/723:728		Triple sheared with non-canonical cWW
homologous
IL_7A0S_018
IL_06136.2
IL_4V65_0681/BB/844:848,
1/BB/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_4V65_1741/BB/850:851,
1/BB/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4V65_0701/BB/854:856,
1/BB/922:923		No text annotation
IL_4V65_1471/BB/854:862,
1/BB/915:923		No text annotation
IL_4V65_0711/BB/856:862,
1/BB/915:922		No text annotation
IL_4V65_0721/BB/862:864,
1/BB/912:915		Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_07785.1
IL_4V65_0731/BB/864:868,
1/BB/909:912		C-loop
homologous
IL_4WF9_033
IL_26222.2
IL_4V65_0741/BB/869:873,
1/BB/904:908		No text annotation
IL_4V65_1751/BB/874:879,
1/BB/898:903		No text annotation
IL_4V65_0761/BB/880:881,
1/BB/895:897		Single bulged A
homologous
IL_7RQB_033
NA
IL_4V65_0771/BB/998:1004,
1/BB/1151:1157		No text annotation
IL_4V65_0781/BB/1004:1013,
1/BB/1149:1151		No text annotation
IL_4V65_0791/BB/1017:1031,
1/BB/1123:1145		No text annotation
IL_4V65_0801/BB/1031:1034,
1/BB/1121:1123		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_57744.1
IL_4V65_0811/BB/1038:1041,
1/BB/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V65_0821/BB/1043:1051,
1/BB/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_4V65_0831/BB/1059:1062,
1/BB/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_4V65_0841/BB/1087:1091,
1/BB/1100:1102		No text annotation
homologous
IL_9DFE_043
NA
IL_4V65_1761/BB/1202:1207,
1/BB/1239:1243		No text annotation
IL_4V65_1771/BB/1208:1221,
1/BB/1228:1238		No text annotation
IL_4V65_0871/BB/1357:1361,
1/BB/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4V65_0881/BB/1415:1416,
1/BB/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_4V65_0891/BB/1417:1421,
1/BB/1577:1581		UAA/GAN
homologous
IL_7RQB_055
NA
IL_4V65_1781/BB/1431:1435,
1/BB/1557:1563		No text annotation
IL_4V65_0911/BB/1437:1440,
1/BB/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_4V65_0921/BB/1468:1471,
1/BB/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4V65_0931/BB/1473:1480,
1/BB/1511:1518		No text annotation
IL_4V65_0941/BB/1481:1482,
1/BB/1507:1510		No text annotation
IL_4V65_0951/BB/1489:1491,
1/BB/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_4V65_0961/BB/1526:1529,
1/BB/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_4V65_0971/BB/1649:1651,
1/BB/2007:2008		Single stack bend
geometric
IL_5TBW_375
NA
IL_4V65_1481/BB/1651:1669,
1/BB/1993:2007		No text annotation
IL_4V65_0981/BB/1685:1691,
1/BB/1696:1703		No text annotation
IL_4V65_0991/BB/1712:1718,
1/BB/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4V65_1001/BB/1720:1724,
1/BB/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_4V65_1011/BB/1727:1728,
1/BB/1731:1733		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_4V65_1021/BB/1764:1767,
1/BB/1986:1988		No text annotation
IL_4V65_1031/BB/1767:1768,
1/BB/1984:1986		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_4V65_1791/BB/1846:1860,
1/BB/1882:1894		No text annotation
IL_4V65_1041/BB/1864:1867,
1/BB/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_4V65_1801/BB/2085:2088,
1/BB/2231:2234		Tandem non-canonical cWW pairs
geometric
IL_4WF9_124
IL_13404.2
IL_4V65_1061/BB/2103:2106,
1/BB/2183:2186		No text annotation
IL_4V65_1511/BB/2107:2120,
1/BB/2178:2182		No text annotation
IL_4V65_1521/BB/2124:2130,
1/BB/2159:2174		No text annotation
IL_4V65_1091/BB/2130:2138,
1/BB/2153:2159		No text annotation
IL_4V65_1811/BB/2202:2204,
1/BB/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_4V65_1111/BB/2293:2300,
1/BB/2316:2339		No text annotation
IL_4V65_1121/BB/2302:2304,
1/BB/2313:2314		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_4V65_1131/BB/2350:2353,
1/BB/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_4V65_1141/BB/2401:2403,
1/BB/2414:2415		No text annotation
IL_4V65_1551/BB/2517:2525,
1/BB/2539:2567		No text annotation
IL_4V65_1151/BB/2526:2527,
1/BB/2536:2538		No text annotation
IL_4V65_1821/BB/2634:2640,
1/BB/2774:2784		No text annotation
IL_4V65_1161/BB/2636:2640,
1/BB/2774:2782		No text annotation
IL_4V65_1171/BB/2652:2658,
1/BB/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_4V65_1181/BB/2679:2685,
1/BB/2724:2728		No text annotation
IL_4V65_1191/BB/2687:2693,
1/BB/2716:2722		No text annotation
IL_4V65_1831/BB/2695:2699,
1/BB/2708:2714		No text annotation
IL_4V65_1211/BB/2737:2742,
1/BB/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_4V65_1221/BB/2811:2836,
1/BB/2882:2889		No text annotation
IL_4V65_1841/BB/2838:2840,
1/BB/2877:2880		No text annotation
IL_4V65_1241/BB/2843:2844,
1/BB/2871:2874		No text annotation
IL_4V65_1851/BB/2844:2846,
1/BB/2870:2871		No text annotation
IL_4V65_1261/BB/2847:2852,
1/BB/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_4V65_001Isolated non-canonical cWW pair
IL_4V65_003No text annotation
IL_4V65_005Tandem non-canonical cWW pairs
IL_4V65_127No text annotation
IL_4V65_011No text annotation
IL_4V65_012No text annotation
IL_4V65_022No text annotation
IL_4V65_023No text annotation
IL_4V65_029No text annotation
IL_4V65_131Isolated non-canonical cWW pair
IL_4V65_132No text annotation
IL_4V65_030No text annotation
IL_4V65_031No text annotation
IL_4V65_034No text annotation
IL_4V65_135No text annotation
IL_4V65_041No text annotation
IL_4V65_136No text annotation
IL_4V65_047No text annotation
IL_4V65_142No text annotation
IL_4V65_050No text annotation
IL_4V65_053Isolated non-canonical cWW pair
IL_4V65_056No text annotation
IL_4V65_057Other IL
IL_4V65_058No text annotation
IL_4V65_062Isolated non-canonical cWW pair
IL_4V65_063No text annotation
IL_4V65_069No text annotation
IL_4V65_075No text annotation
IL_4V65_085No text annotation
IL_4V65_086No text annotation
IL_4V65_090No text annotation
IL_4V65_149No text annotation
IL_4V65_150No text annotation
IL_4V65_105Other IL
IL_4V65_107No text annotation
IL_4V65_108No text annotation
IL_4V65_110Single bulged G, near cWW
IL_4V65_153Isolated non-canonical cWW pair
IL_4V65_154Tandem non-canonical cWW pairs
IL_4V65_156No text annotation
IL_4V65_120No text annotation
IL_4V65_123No text annotation
IL_4V65_125No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V65_0281/A1/18:32,
1/A1/552:567,
1/A1/883:917		No text annotation
J3_4V65_0011/A1/46:47,
1/A1/361:367,
1/A1/393:395		No text annotation
homologous
J3_6CZR_015
NA
J3_4V65_0101/A1/586:589,
1/A1/650:654,
1/A1/754:755		No text annotation
J3_4V65_0111/A1/586:589,
1/A1/650:655,
1/A1/751:755		No text annotation
J3_4V65_0121/A1/672:678,
1/A1/713:726,
1/A1/731:734		No text annotation
J3_4V65_0131/A1/933:939,
1/A1/1344:1352,
1/A1/1370:1384		No text annotation
J3_4V65_0141/A1/936:939,
1/A1/1344:1352,
1/A1/1370:1379		No text annotation
J3_4V65_0151/A1/990:999,
1/A1/1041:1056,
1/A1/1204:1215		No text annotation
J3_4V65_0291/A1/1002:1006,
1/A1/1023:1027,
1/A1/1034:1038		No text annotation
J3_4V65_0301/A1/1063:1087,
1/A1/1098:1113,
1/A1/1187:1193		No text annotation
J3_4V65_0311/A1/1116:1119,
1/A1/1154:1158,
1/A1/1181:1184		No text annotation
J3_4V65_0321/A1/1116:1119,
1/A1/1154:1161,
1/A1/1175:1184		No text annotation
J3_4V65_0331/BA/10:16,
1/BA/68:80,
1/BA/96:110		No text annotation
J3_4V65_0211/BB/22:35,
1/BB/445:481,
1/BB/509:518		No text annotation
J3_4V65_0221/BB/295:301,
1/BB/316:325,
1/BB/337:343		No text annotation
J3_4V65_0231/BB/678:696,
1/BB/767:778,
1/BB/787:799		No text annotation
J3_4V65_0041/BB/1055:1058,
1/BB/1080:1087,
1/BB/1102:1104		No text annotation
J3_4V65_0051/BB/1298:1306,
1/BB/1623:1627,
1/BB/1639:1642		No text annotation
J3_4V65_0341/BB/1343:1355,
1/BB/1376:1387,
1/BB/1400:1404		No text annotation
J3_4V65_0061/BB/1424:1430,
1/BB/1564:1565,
1/BB/1568:1574		No text annotation
J3_4V65_0351/BB/1768:1796,
1/BB/1823:1830,
1/BB/1975:1984		No text annotation
J3_4V65_0271/BB/2089:2096,
1/BB/2193:2200,
1/BB/2223:2230		No text annotation
J3_4V65_0071/BB/2091:2096,
1/BB/2193:2200,
1/BB/2223:2228		No text annotation
J3_4V65_0361/BB/2517:2524,
1/BB/2540:2547,
1/BB/2562:2567		No text annotation
J3_4V65_0081/BB/2789:2791,
1/BB/2805:2811,
1/BB/2889:2894		No text annotation
J3_4V65_0371/BB/2812:2816,
1/BB/2830:2836,
1/BB/2882:2888		No text annotation
J4_4V65_0011/A1/142:144,
1/A1/178:184,
1/A1/193:198,
1/A1/219:221		No text annotation
J4_4V65_0021/A1/567:584,
1/A1/757:770,
1/A1/809:824,
1/A1/876:883		No text annotation
J4_4V65_0031/A1/940:947,
1/A1/1234:1243,
1/A1/1294:1308,
1/A1/1329:1343		No text annotation
J4_4V65_0041/AA/7:10,
1/AA/25:27,
1/AA/43:49,
1/AA/65:66		tRNA junction
homologous
J4_5HR7_002
J4_70449.29
J4_4V65_0051/AE/7:10,
1/AE/25:27,
1/AE/43:49,
1/AE/65:66		tRNA junction
homologous
J4_5AXM_001
J4_70449.29
J4_4V65_0141/AP/7:10,
1/AP/25:27,
1/AP/43:49,
1/AP/65:66		tRNA junction
homologous
J4_3KFU_002
J4_70449.29
J4_4V65_0071/BB/268:269,
1/BB/370:375,
1/BB/399:406,
1/BB/421:424		No text annotation
homologous
J4_7A0S_001
J4_45801.6
J4_4V65_0081/BB/601:605,
1/BB/624:628,
1/BB/635:638,
1/BB/650:656		No text annotation
J4_4V65_0091/BB/1306:1319,
1/BB/1333:1343,
1/BB/1404:1405,
1/BB/1597:1623		No text annotation
J4_4V65_0151/BB/1444:1447,
1/BB/1464:1467,
1/BB/1525:1526,
1/BB/1546:1547		No text annotation
J4_4V65_0111/BB/1833:1843,
1/BB/1897:1906,
1/BB/1924:1935,
1/BB/1967:1972		No text annotation
J4_4V65_0161/BB/2285:2290,
1/BB/2342:2347,
1/BB/2370:2373,
1/BB/2380:2383		No text annotation
J4_4V65_0131/BB/2642:2648,
1/BB/2672:2679,
1/BB/2728:2736,
1/BB/2768:2772		No text annotation
J5_4V65_0101/A1/35:39,
1/A1/403:406,
1/A1/436:440,
1/A1/497:500,
1/A1/545:549		No text annotation
J5_4V65_0111/A1/35:39,
1/A1/403:406,
1/A1/436:442,
1/A1/492:500,
1/A1/545:549		No text annotation
J5_4V65_0121/BB/47:54,
1/BB/116:121,
1/BB/130:132,
1/BB/147:150,
1/BB/176:178		No text annotation
J5_4V65_0131/BB/817:839,
1/BB/939:952,
1/BB/965:996,
1/BB/1159:1166,
1/BB/1183:1190		No text annotation
J5_4V65_0041/BB/817:840,
1/BB/938:952,
1/BB/965:997,
1/BB/1158:1166,
1/BB/1183:1190		No text annotation
J5_4V65_0141/BB/1306:1319,
1/BB/1333:1355,
1/BB/1376:1387,
1/BB/1400:1405,
1/BB/1597:1623		No text annotation
J5_4V65_0051/BB/1306:1319,
1/BB/1333:1355,
1/BB/1376:1388,
1/BB/1399:1405,
1/BB/1597:1623		No text annotation
J5_4V65_0061/BB/1651:1682,
1/BB/1706:1707,
1/BB/1751:1752,
1/BB/1756:1764,
1/BB/1988:2007		No text annotation
J5_4V65_0071/BB/1669:1682,
1/BB/1706:1707,
1/BB/1751:1752,
1/BB/1756:1764,
1/BB/1988:1993		No text annotation
J5_4V65_0151/BB/2048:2067,
1/BB/2443:2462,
1/BB/2488:2517,
1/BB/2567:2588,
1/BB/2606:2620		No text annotation
J5_4V65_0161/BB/2067:2083,
1/BB/2236:2260,
1/BB/2280:2285,
1/BB/2383:2399,
1/BB/2417:2443		No text annotation
J6_4V65_0031/BB/45:46,
1/BB/179:183,
1/BB/214:224,
1/BB/231:235,
1/BB/262:266,
1/BB/426:433		No text annotation
J6_4V65_0041/BB/817:822,
1/BB/835:839,
1/BB/939:952,
1/BB/965:996,
1/BB/1159:1166,
1/BB/1183:1190		No text annotation
J7_4V65_0021/A1/58:63,
1/A1/104:124,
1/A1/237:240,
1/A1/286:291,
1/A1/309:316,
1/A1/337:339,
1/A1/350:354		No text annotation
J13_4V65_0021/BB/8:20,
1/BB/520:542,
1/BB/551:589,
1/BB/668:678,
1/BB/799:813,
1/BB/1194:1201,
1/BB/1244:1278,
1/BB/1292:1295,
1/BB/1645:1648,
1/BB/2009:2044,
1/BB/2624:2630,
1/BB/2788:2789,
1/BB/2894:2895		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V65_009No text annotation
J3_4V65_002No text annotation
J3_4V65_003No text annotation
J3_4V65_016No text annotation
J3_4V65_017No text annotation
J3_4V65_018No text annotation
J3_4V65_019No text annotation
J3_4V65_020No text annotation
J3_4V65_024No text annotation
J3_4V65_025No text annotation
J3_4V65_026No text annotation
J4_4V65_006No text annotation
J4_4V65_010No text annotation
J4_4V65_012No text annotation
J5_4V65_001No text annotation
J5_4V65_002No text annotation
J5_4V65_003No text annotation
J5_4V65_008No text annotation
J5_4V65_009No text annotation
J6_4V65_001No text annotation
J6_4V65_002No text annotation
J7_4V65_001No text annotation
J13_4V65_001No text annotation

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