HL_4V65_035
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V65_035 not in the Motif Atlas
- Homologous match to HL_5WWT_002
- Geometric discrepancy: 0.2503
- The information below is about HL_5WWT_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V65|1|AP|G|53
4V65|1|AP|U|54
4V65|1|AP|U|55
4V65|1|AP|C|56
4V65|1|AP|G|57
4V65|1|AP|A|58
4V65|1|AP|U|59
4V65|1|AP|C|60
4V65|1|AP|C|61
Current chains
- Chain AP
- A/T, P and E-site tRNAs
Nearby chains
- Chain B2
- 50S ribosomal protein L5
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: