HL_4V65_045

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCUGGAAAGG

Length

10 nucleotides

Bulged bases

4V65|1|BB|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_045 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2647

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V65|1|BB|U|304
4V65|1|BB|C|305
4V65|1|BB|U|306
4V65|1|BB|G|307
4V65|1|BB|G|308
4V65|1|BB|A|309
4V65|1|BB|A|310
4V65|1|BB|A|311
4V65|1|BB|G|312
4V65|1|BB|G|313

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L24