HL_4V65_046

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V65|1|BB|G|329, 4V65|1|BB|A|330, 4V65|1|BB|C|331, 4V65|1|BB|G|333, 4V65|1|BB|C|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_046 not in the Motif Atlas

Homologous match to HL_9DFE_011

Geometric discrepancy: 0.521

The information below is about HL_9DFE_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V65|1|BB|G|327
4V65|1|BB|U|328
4V65|1|BB|G|329
4V65|1|BB|A|330
4V65|1|BB|C|331
4V65|1|BB|A|332
4V65|1|BB|G|333
4V65|1|BB|C|334
4V65|1|BB|C|335

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain BO

50S ribosomal protein L24