HL_4V65_051

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V65|1|BB|A|613, 4V65|1|BB|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_051 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.4103

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V65|1|BB|C|611
4V65|1|BB|G|612
4V65|1|BB|A|613
4V65|1|BB|A|614
4V65|1|BB|U|615
4V65|1|BB|A|616
4V65|1|BB|G|617

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4