HL_4V65_059

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V65|1|BB|A|1067, 4V65|1|BB|G|1068, 4V65|1|BB|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_059 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5997

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V65|1|BB|C|1064
4V65|1|BB|U|1065
4V65|1|BB|U|1066
4V65|1|BB|A|1067
4V65|1|BB|G|1068
4V65|1|BB|A|1069
4V65|1|BB|A|1070
4V65|1|BB|G|1071
4V65|1|BB|C|1072
4V65|1|BB|A|1073
4V65|1|BB|G|1074

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain B5

50S ribosomal protein L11

Chain BF

50S ribosomal protein L16