HL_4V65_062

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

4V65|1|BB|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_062 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.5496

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|U|1222
4V65|1|BB|G|1223
4V65|1|BB|U|1224
4V65|1|BB|G|1225
4V65|1|BB|A|1226
4V65|1|BB|G|1227

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L20

Chain BK

50S ribosomal protein L21