HL_4V65_077

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAAAUUCCUUGUCGGGUAAGUUCCGACCUGCAC

Length

33 nucleotides

Bulged bases

4V65|1|BB|A|1938, 4V65|1|BB|U|1939, 4V65|1|BB|A|1966

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|1935
4V65|1|BB|A|1936
4V65|1|BB|A|1937
4V65|1|BB|A|1938
4V65|1|BB|U|1939
4V65|1|BB|U|1940
4V65|1|BB|C|1941
4V65|1|BB|C|1942
4V65|1|BB|U|1943
4V65|1|BB|U|1944
4V65|1|BB|G|1945
4V65|1|BB|U|1946
4V65|1|BB|C|1947
4V65|1|BB|G|1948
4V65|1|BB|G|1949
4V65|1|BB|G|1950
4V65|1|BB|U|1951
4V65|1|BB|A|1952
4V65|1|BB|A|1953
4V65|1|BB|G|1954
4V65|1|BB|U|1955
4V65|1|BB|U|1956
4V65|1|BB|C|1957
4V65|1|BB|C|1958
4V65|1|BB|G|1959
4V65|1|BB|A|1960
4V65|1|BB|C|1961
4V65|1|BB|C|1962
4V65|1|BB|U|1963
4V65|1|BB|G|1964
4V65|1|BB|C|1965
4V65|1|BB|A|1966
4V65|1|BB|C|1967

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L14