HL_4V65_081

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V65|1|BB|A|2268, 4V65|1|BB|G|2269, 4V65|1|BB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_081 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.316

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V65|1|BB|C|2264
4V65|1|BB|U|2265
4V65|1|BB|A|2266
4V65|1|BB|A|2267
4V65|1|BB|A|2268
4V65|1|BB|G|2269
4V65|1|BB|A|2270
4V65|1|BB|G|2271
4V65|1|BB|U|2272
4V65|1|BB|A|2273
4V65|1|BB|A|2274
4V65|1|BB|C|2275
4V65|1|BB|G|2276

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain BF

50S ribosomal protein L16

Chain BP

50S ribosomal protein L27