HL_4V65_087

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V65|1|BB|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_087 not in the Motif Atlas

Homologous match to HL_3MOJ_001

Geometric discrepancy: 0.4868

The information below is about HL_3MOJ_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|U|2528
4V65|1|BB|G|2529
4V65|1|BB|A|2530
4V65|1|BB|A|2531
4V65|1|BB|G|2532
4V65|1|BB|U|2533
4V65|1|BB|A|2534
4V65|1|BB|G|2535

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BX

50S ribosomal protein L36