HL_4V65_092

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V65|1|BB|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_092 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.3412

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V65|1|BB|C|2745
4V65|1|BB|U|2746
4V65|1|BB|G|2747
4V65|1|BB|A|2748
4V65|1|BB|A|2749
4V65|1|BB|A|2750
4V65|1|BB|G|2751
4V65|1|BB|C|2752
4V65|1|BB|A|2753
4V65|1|BB|U|2754
4V65|1|BB|C|2755
4V65|1|BB|U|2756
4V65|1|BB|A|2757
4V65|1|BB|A|2758
4V65|1|BB|G|2759

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BX

50S ribosomal protein L36