HL_4V65_100

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGUUAAUAUUCC

Length

12 nucleotides

Bulged bases

4V65|1|BB|U|1396, 4V65|1|BB|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_100 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1886

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V65|1|BB|G|1388
4V65|1|BB|G|1389
4V65|1|BB|U|1390
4V65|1|BB|U|1391
4V65|1|BB|A|1392
4V65|1|BB|A|1393
4V65|1|BB|U|1394
4V65|1|BB|A|1395
4V65|1|BB|U|1396
4V65|1|BB|U|1397
4V65|1|BB|C|1398
4V65|1|BB|C|1399

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L23