HL_4V65_109

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

4V65|1|BB|C|2145, 4V65|1|BB|C|2146, 4V65|1|BB|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_109 not in the Motif Atlas

Geometric match to HL_8CRE_052

Geometric discrepancy: 0.3577

The information below is about HL_8CRE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V65|1|BB|C|2143
4V65|1|BB|G|2144
4V65|1|BB|C|2145
4V65|1|BB|C|2146
4V65|1|BB|A|2147
4V65|1|BB|G|2148

Current chains

Chain BB

23S rRNA

Nearby chains