HL_4V66_013

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_013 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.525

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

4V66|1|A1|G|617
4V66|1|A1|C|618
4V66|1|A1|U|619
4V66|1|A1|C|620
4V66|1|A1|A|621
4V66|1|A1|A|622
4V66|1|A1|C|623

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S16

Chain AR

30S ribosomal protein S4