4V66 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V66_001 | No text annotation | ||
| HL_4V66_002 | GNRA | ||
| HL_4V66_003 | GNRA | ||
| HL_4V66_004 | UNCG | ||
| HL_4V66_005 | No text annotation | ||
| HL_4V66_100 | No text annotation | ||
| HL_4V66_006 | No text annotation | ||
| HL_4V66_007 | No text annotation | ||
| HL_4V66_008 | UNCG | ||
| HL_4V66_096 | No text annotation | ||
| HL_4V66_009 | No text annotation | ||
| HL_4V66_010 | No text annotation | ||
| HL_4V66_101 | No text annotation | ||
| HL_4V66_011 | No text annotation | ||
| HL_4V66_012 | No text annotation | ||
| HL_4V66_013 | GNRA-like with tWH | ||
| HL_4V66_014 | No text annotation | ||
| HL_4V66_015 | GNRA | ||
| HL_4V66_016 | No text annotation | ||
| HL_4V66_017 | No text annotation | ||
| HL_4V66_018 | GNRA | ||
| HL_4V66_019 | No text annotation | ||
| HL_4V66_020 | T-loop related | ||
| HL_4V66_021 | No text annotation | ||
| HL_4V66_022 | GNRA | ||
| HL_4V66_023 | No text annotation | ||
| HL_4V66_024 | No text annotation | ||
| HL_4V66_102 | No text annotation | ||
| HL_4V66_025 | No text annotation | ||
| HL_4V66_103 | No text annotation | ||
| HL_4V66_026 | UNCG | ||
| HL_4V66_027 | No text annotation | ||
| HL_4V66_028 | No text annotation | ||
| HL_4V66_029 | T-loop with 2 stacked bulged bases | ||
| HL_4V66_030 | tRNA D-loop | ||
| HL_4V66_031 | tRNA anticodon loop | ||
| HL_4V66_032 | T-loop with 2 stacked bulged bases | ||
| HL_4V66_033 | No text annotation | ||
| HL_4V66_034 | No text annotation | ||
| HL_4V66_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V66_036 | No text annotation | ||
| HL_4V66_037 | No text annotation | ||
| HL_4V66_104 | No text annotation | ||
| HL_4V66_038 | Externally structured | ||
| HL_4V66_039 | No text annotation | ||
| HL_4V66_040 | UNCG | ||
| HL_4V66_041 | No text annotation | ||
| HL_4V66_042 | No text annotation | ||
| HL_4V66_043 | No text annotation | ||
| HL_4V66_044 | No text annotation | ||
| HL_4V66_105 | No text annotation | ||
| HL_4V66_045 | tRNA D-loop | ||
| HL_4V66_046 | T-loop with unstacked turn | ||
| HL_4V66_047 | No text annotation | ||
| HL_4V66_048 | No text annotation | ||
| HL_4V66_097 | No text annotation | ||
| HL_4V66_106 | Pseudoknot geometry | ||
| HL_4V66_049 | GNRA | ||
| HL_4V66_050 | No text annotation | ||
| HL_4V66_051 | No text annotation | ||
| HL_4V66_052 | GNRA | ||
| HL_4V66_053 | No text annotation | ||
| HL_4V66_054 | GNRA wlth tandem sheared | ||
| HL_4V66_055 | No text annotation | ||
| HL_4V66_056 | No text annotation | ||
| HL_4V66_057 | GNRA | ||
| HL_4V66_058 | No text annotation | ||
| HL_4V66_059 | No text annotation | ||
| HL_4V66_060 | GNRA wlth tandem sheared | ||
| HL_4V66_061 | No text annotation | ||
| HL_4V66_062 | GNRA | ||
| HL_4V66_063 | T-loop with 2 stacked bulged bases | ||
| HL_4V66_064 | No text annotation | ||
| HL_4V66_065 | GNRA | ||
| HL_4V66_066 | No text annotation | ||
| HL_4V66_067 | No text annotation | ||
| HL_4V66_068 | Pseudoknot geometry with 3' bulge | ||
| HL_4V66_069 | UNCG | ||
| HL_4V66_070 | Mini UNCG | ||
| HL_4V66_071 | No text annotation | ||
| HL_4V66_107 | No text annotation | ||
| HL_4V66_072 | Externally structured | ||
| HL_4V66_073 | No text annotation | ||
| HL_4V66_074 | No text annotation | ||
| HL_4V66_075 | No text annotation | ||
| HL_4V66_076 | No text annotation | ||
| HL_4V66_077 | No text annotation | ||
| HL_4V66_078 | No text annotation | ||
| HL_4V66_079 | No text annotation | ||
| HL_4V66_080 | No text annotation | ||
| HL_4V66_081 | No text annotation | ||
| HL_4V66_082 | No text annotation | ||
| HL_4V66_083 | No text annotation | ||
| HL_4V66_084 | No text annotation | ||
| HL_4V66_108 | No text annotation | ||
| HL_4V66_085 | GNRA | ||
| HL_4V66_086 | No text annotation | ||
| HL_4V66_098 | No text annotation | ||
| HL_4V66_087 | No text annotation | ||
| HL_4V66_099 | No text annotation | ||
| HL_4V66_088 | GNRA | ||
| HL_4V66_089 | No text annotation | ||
| HL_4V66_090 | No text annotation | ||
| HL_4V66_091 | UNCG variation | ||
| HL_4V66_092 | No text annotation | ||
| HL_4V66_093 | No text annotation | ||
| HL_4V66_094 | Mini UNCG | ||
| HL_4V66_095 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V66_001 | Single bulged A | ||
| IL_4V66_002 | No text annotation | ||
| IL_4V66_003 | No text annotation | ||
| IL_4V66_126 | No text annotation | ||
| IL_4V66_004 | Minor groove platform | ||
| IL_4V66_005 | Tandem non-canonical cWW pairs | ||
| IL_4V66_165 | Single bulged G | ||
| IL_4V66_127 | Isolated non-canonical cWW pair | ||
| IL_4V66_006 | No text annotation | ||
| IL_4V66_128 | Isolated non-canonical cWW pair | ||
| IL_4V66_129 | Isolated cWH basepair | ||
| IL_4V66_007 | tWH-tWH-tHW-tHW | ||
| IL_4V66_008 | No text annotation | ||
| IL_4V66_009 | No text annotation | ||
| IL_4V66_010 | No text annotation | ||
| IL_4V66_011 | No text annotation | ||
| IL_4V66_012 | No text annotation | ||
| IL_4V66_166 | No text annotation | ||
| IL_4V66_013 | No text annotation | ||
| IL_4V66_014 | No text annotation | ||
| IL_4V66_015 | No text annotation | ||
| IL_4V66_016 | No text annotation | ||
| IL_4V66_167 | Single stack bend | ||
| IL_4V66_017 | No text annotation | ||
| IL_4V66_018 | Single stack bend | ||
| IL_4V66_019 | Isolated non-canonical cWW pair | ||
| IL_4V66_130 | No text annotation | ||
| IL_4V66_168 | No text annotation | ||
| IL_4V66_020 | No text annotation | ||
| IL_4V66_021 | No text annotation | ||
| IL_4V66_169 | Kink-turn related | ||
| IL_4V66_022 | Major groove platform | ||
| IL_4V66_023 | Major groove minor groove platform; mini C-loop | ||
| IL_4V66_131 | No text annotation | ||
| IL_4V66_024 | Major groove platform; stack outside cWW | ||
| IL_4V66_170 | Single stack bend | ||
| IL_4V66_025 | No text annotation | ||
| IL_4V66_026 | No text annotation | ||
| IL_4V66_132 | No text annotation | ||
| IL_4V66_027 | No text annotation | ||
| IL_4V66_028 | No text annotation | ||
| IL_4V66_133 | No text annotation | ||
| IL_4V66_029 | No text annotation | ||
| IL_4V66_030 | No text annotation | ||
| IL_4V66_031 | tSH-tHW-tHS | ||
| IL_4V66_134 | Isolated non-canonical cWW pair | ||
| IL_4V66_032 | No text annotation | ||
| IL_4V66_135 | No text annotation | ||
| IL_4V66_171 | No text annotation | ||
| IL_4V66_033 | No text annotation | ||
| IL_4V66_034 | Single stack bend | ||
| IL_4V66_136 | No text annotation | ||
| IL_4V66_137 | Isolated non-canonical cWW pair | ||
| IL_4V66_035 | No text annotation | ||
| IL_4V66_036 | No text annotation | ||
| IL_4V66_138 | No text annotation | ||
| IL_4V66_037 | No text annotation | ||
| IL_4V66_139 | Isolated non-canonical cWW pair | ||
| IL_4V66_038 | Tandem non-canonical cWW pairs | ||
| IL_4V66_039 | Single bulged U | ||
| IL_4V66_040 | No text annotation | ||
| IL_4V66_140 | No text annotation | ||
| IL_4V66_041 | Minor groove platform | ||
| IL_4V66_042 | No text annotation | ||
| IL_4V66_172 | No text annotation | ||
| IL_4V66_141 | No text annotation | ||
| IL_4V66_043 | No text annotation | ||
| IL_4V66_044 | Double sheared with non-canonical cWW | ||
| IL_4V66_045 | No text annotation | ||
| IL_4V66_142 | No text annotation | ||
| IL_4V66_046 | No text annotation | ||
| IL_4V66_173 | No text annotation | ||
| IL_4V66_143 | No text annotation | ||
| IL_4V66_144 | No text annotation | ||
| IL_4V66_047 | No text annotation | ||
| IL_4V66_048 | No text annotation | ||
| IL_4V66_145 | No text annotation | ||
| IL_4V66_174 | No text annotation | ||
| IL_4V66_049 | No text annotation | ||
| IL_4V66_050 | Major groove intercalation | ||
| IL_4V66_175 | No text annotation | ||
| IL_4V66_146 | No text annotation | ||
| IL_4V66_051 | No text annotation | ||
| IL_4V66_052 | Minor groove platform | ||
| IL_4V66_176 | No text annotation | ||
| IL_4V66_147 | No text annotation | ||
| IL_4V66_053 | Isolated non-canonical cWW pair | ||
| IL_4V66_177 | Single bulged A | ||
| IL_4V66_054 | No text annotation | ||
| IL_4V66_178 | No text annotation | ||
| IL_4V66_055 | No text annotation | ||
| IL_4V66_148 | No text annotation | ||
| IL_4V66_056 | No text annotation | ||
| IL_4V66_057 | Other IL | ||
| IL_4V66_179 | Single stack bend | ||
| IL_4V66_058 | No text annotation | ||
| IL_4V66_149 | No text annotation | ||
| IL_4V66_059 | Single stack bend | ||
| IL_4V66_060 | No text annotation | ||
| IL_4V66_180 | No text annotation | ||
| IL_4V66_061 | No text annotation | ||
| IL_4V66_150 | Isolated non-canonical cWW pair | ||
| IL_4V66_062 | No text annotation | ||
| IL_4V66_181 | No text annotation | ||
| IL_4V66_063 | No text annotation | ||
| IL_4V66_064 | No text annotation | ||
| IL_4V66_065 | Triple sheared with non-canonical cWW | ||
| IL_4V66_066 | No text annotation | ||
| IL_4V66_067 | No text annotation | ||
| IL_4V66_182 | Single stack bend | ||
| IL_4V66_068 | No text annotation | ||
| IL_4V66_151 | No text annotation | ||
| IL_4V66_183 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V66_069 | No text annotation | ||
| IL_4V66_070 | Isolated non-canonical cWW with bulges | ||
| IL_4V66_071 | C-loop | ||
| IL_4V66_072 | No text annotation | ||
| IL_4V66_073 | No text annotation | ||
| IL_4V66_184 | No text annotation | ||
| IL_4V66_074 | Single bulged A | ||
| IL_4V66_185 | No text annotation | ||
| IL_4V66_075 | No text annotation | ||
| IL_4V66_076 | No text annotation | ||
| IL_4V66_152 | No text annotation | ||
| IL_4V66_077 | Isolated non-canonical cWW pair | ||
| IL_4V66_078 | Tandem non-canonical cWW pairs | ||
| IL_4V66_079 | Kink-turn | ||
| IL_4V66_080 | No text annotation | ||
| IL_4V66_081 | No text annotation | ||
| IL_4V66_082 | No text annotation | ||
| IL_4V66_153 | No text annotation | ||
| IL_4V66_083 | No text annotation | ||
| IL_4V66_154 | Isolated non-canonical cWW pair | ||
| IL_4V66_155 | No text annotation | ||
| IL_4V66_084 | No text annotation | ||
| IL_4V66_085 | tSH-tHW-tHS | ||
| IL_4V66_086 | No text annotation | ||
| IL_4V66_087 | UAA/GAN | ||
| IL_4V66_088 | No text annotation | ||
| IL_4V66_156 | No text annotation | ||
| IL_4V66_089 | No text annotation | ||
| IL_4V66_090 | No text annotation | ||
| IL_4V66_186 | No text annotation | ||
| IL_4V66_091 | No text annotation | ||
| IL_4V66_092 | No text annotation | ||
| IL_4V66_093 | Single bulged A | ||
| IL_4V66_094 | UAA/GAN variation | ||
| IL_4V66_095 | Single stack bend | ||
| IL_4V66_157 | No text annotation | ||
| IL_4V66_096 | No text annotation | ||
| IL_4V66_097 | No text annotation | ||
| IL_4V66_098 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V66_099 | No text annotation | ||
| IL_4V66_187 | Triple sheared | ||
| IL_4V66_100 | Single bulged C | ||
| IL_4V66_101 | No text annotation | ||
| IL_4V66_102 | Single stack bend | ||
| IL_4V66_158 | No text annotation | ||
| IL_4V66_188 | No text annotation | ||
| IL_4V66_103 | UAA/GAN related | ||
| IL_4V66_104 | No text annotation | ||
| IL_4V66_189 | No text annotation | ||
| IL_4V66_105 | No text annotation | ||
| IL_4V66_106 | Tandem non-canonical cWW pairs | ||
| IL_4V66_159 | Partly complementary | ||
| IL_4V66_107 | No text annotation | ||
| IL_4V66_190 | No text annotation | ||
| IL_4V66_108 | No text annotation | ||
| IL_4V66_109 | No text annotation | ||
| IL_4V66_160 | No text annotation | ||
| IL_4V66_110 | No text annotation | ||
| IL_4V66_111 | Decoding loop related | ||
| IL_4V66_191 | Single bulged U | ||
| IL_4V66_161 | Isolated non-canonical cWW pair | ||
| IL_4V66_162 | Tandem non-canonical cWW pairs | ||
| IL_4V66_192 | No text annotation | ||
| IL_4V66_163 | No text annotation | ||
| IL_4V66_112 | Single stack bend | ||
| IL_4V66_113 | Double sheared | ||
| IL_4V66_114 | No text annotation | ||
| IL_4V66_115 | No text annotation | ||
| IL_4V66_116 | No text annotation | ||
| IL_4V66_193 | No text annotation | ||
| IL_4V66_117 | tSH-tHS-tHW | ||
| IL_4V66_118 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V66_194 | No text annotation | ||
| IL_4V66_119 | No text annotation | ||
| IL_4V66_195 | No text annotation | ||
| IL_4V66_120 | No text annotation | ||
| IL_4V66_121 | UAA/GAN with extra cWW | ||
| IL_4V66_196 | No text annotation | ||
| IL_4V66_164 | No text annotation | ||
| IL_4V66_197 | No text annotation | ||
| IL_4V66_122 | No text annotation | ||
| IL_4V66_123 | No text annotation | ||
| IL_4V66_124 | No text annotation | ||
| IL_4V66_125 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V66_027 | No text annotation | ||
| J3_4V66_013 | No text annotation | ||
| J3_4V66_028 | No text annotation | ||
| J3_4V66_001 | No text annotation | ||
| J3_4V66_002 | No text annotation | ||
| J3_4V66_003 | No text annotation | ||
| J3_4V66_014 | No text annotation | ||
| J3_4V66_029 | No text annotation | ||
| J3_4V66_015 | No text annotation | ||
| J3_4V66_016 | No text annotation | ||
| J3_4V66_004 | No text annotation | ||
| J3_4V66_005 | No text annotation | ||
| J3_4V66_017 | No text annotation | ||
| J3_4V66_006 | No text annotation | ||
| J3_4V66_030 | No text annotation | ||
| J3_4V66_018 | No text annotation | ||
| J3_4V66_031 | No text annotation | ||
| J3_4V66_007 | No text annotation | ||
| J3_4V66_019 | No text annotation | ||
| J3_4V66_020 | No text annotation | ||
| J3_4V66_021 | No text annotation | ||
| J3_4V66_008 | No text annotation | ||
| J3_4V66_009 | No text annotation | ||
| J3_4V66_032 | No text annotation | ||
| J3_4V66_022 | No text annotation | ||
| J3_4V66_010 | No text annotation | ||
| J3_4V66_023 | No text annotation | ||
| J3_4V66_033 | No text annotation | ||
| J3_4V66_024 | No text annotation | ||
| J3_4V66_025 | No text annotation | ||
| J3_4V66_034 | No text annotation | ||
| J3_4V66_011 | No text annotation | ||
| J3_4V66_035 | No text annotation | ||
| J3_4V66_026 | No text annotation | ||
| J3_4V66_012 | No text annotation | ||
| J4_4V66_001 | No text annotation | ||
| J4_4V66_014 | No text annotation | ||
| J4_4V66_002 | No text annotation | ||
| J4_4V66_015 | No text annotation | ||
| J4_4V66_003 | No text annotation | ||
| J4_4V66_004 | No text annotation | ||
| J4_4V66_005 | tRNA junction | ||
| J4_4V66_016 | tRNA junction | ||
| J4_4V66_006 | No text annotation | ||
| J4_4V66_007 | No text annotation | ||
| J4_4V66_008 | No text annotation | ||
| J4_4V66_009 | No text annotation | ||
| J4_4V66_017 | No text annotation | ||
| J4_4V66_010 | No text annotation | ||
| J4_4V66_011 | No text annotation | ||
| J4_4V66_018 | No text annotation | ||
| J4_4V66_012 | No text annotation | ||
| J4_4V66_013 | No text annotation | ||
| J4_4V66_019 | No text annotation | ||
| J5_4V66_001 | No text annotation | ||
| J5_4V66_011 | No text annotation | ||
| J5_4V66_002 | No text annotation | ||
| J5_4V66_003 | No text annotation | ||
| J5_4V66_012 | No text annotation | ||
| J5_4V66_013 | No text annotation | ||
| J5_4V66_014 | No text annotation | ||
| J5_4V66_004 | No text annotation | ||
| J5_4V66_005 | No text annotation | ||
| J5_4V66_006 | No text annotation | ||
| J5_4V66_007 | No text annotation | ||
| J5_4V66_008 | No text annotation | ||
| J5_4V66_015 | No text annotation | ||
| J5_4V66_016 | No text annotation | ||
| J5_4V66_009 | No text annotation | ||
| J5_4V66_017 | No text annotation | ||
| J5_4V66_010 | No text annotation | ||
| J6_4V66_001 | No text annotation | ||
| J6_4V66_002 | No text annotation | ||
| J6_4V66_004 | No text annotation | ||
| J6_4V66_003 | No text annotation | ||
| J7_4V66_001 | No text annotation | ||
| J9_4V66_001 | No text annotation | ||
| J9_4V66_002 | No text annotation |
Coloring options: