HL_4V66_017

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V66|1|A1|U|842, 4V66|1|A1|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_017 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3999

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V66|1|A1|C|840
4V66|1|A1|C|841
4V66|1|A1|U|842
4V66|1|A1|U|843
4V66|1|A1|G|844
4V66|1|A1|A|845
4V66|1|A1|G|846

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AK

30S ribosomal protein S18