HL_4V66_032

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_032 not in the Motif Atlas

Homologous match to HL_6UFM_003

Geometric discrepancy: 0.1501

The information below is about HL_6UFM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V66|1|AE|G|53
4V66|1|AE|U|54
4V66|1|AE|U|55
4V66|1|AE|C|56
4V66|1|AE|G|57
4V66|1|AE|A|58
4V66|1|AE|U|59
4V66|1|AE|C|60
4V66|1|AE|C|61

Current chains

Chain AE

A/T, P and E-site tRNAs

Nearby chains

Chain BZ

50S ribosomal protein L1P