HL_4V66_067

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V66|1|BB|A|1453, 4V66|1|BB|U|1458

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_067 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2428

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

4V66|1|BB|G|1450
4V66|1|BB|C|1451
4V66|1|BB|G|1452
4V66|1|BB|A|1453
4V66|1|BB|C|1454
4V66|1|BB|G|1455
4V66|1|BB|G|1456
4V66|1|BB|U|1457
4V66|1|BB|U|1458
4V66|1|BB|G|1459
4V66|1|BB|U|1460
4V66|1|BB|C|1461

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L17