HL_4V66_082

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V66|1|BB|A|2268, 4V66|1|BB|G|2269, 4V66|1|BB|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_082 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2862

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V66|1|BB|C|2264
4V66|1|BB|U|2265
4V66|1|BB|A|2266
4V66|1|BB|A|2267
4V66|1|BB|A|2268
4V66|1|BB|G|2269
4V66|1|BB|A|2270
4V66|1|BB|G|2271
4V66|1|BB|U|2272
4V66|1|BB|A|2273
4V66|1|BB|A|2274
4V66|1|BB|C|2275
4V66|1|BB|G|2276

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain BF

50S ribosomal protein L16

Chain BP

50S ribosomal protein L27