HL_4V66_090

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAACGUCGUGAGACAGUUC

Length

19 nucleotides

Bulged bases

4V66|1|BB|U|2604

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_090 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.2554

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V66|1|BB|G|2588
4V66|1|BB|A|2589
4V66|1|BB|A|2590
4V66|1|BB|C|2591
4V66|1|BB|G|2592
4V66|1|BB|U|2593
4V66|1|BB|C|2594
4V66|1|BB|G|2595
4V66|1|BB|U|2596
4V66|1|BB|G|2597
4V66|1|BB|A|2598
4V66|1|BB|G|2599
4V66|1|BB|A|2600
4V66|1|BB|C|2601
4V66|1|BB|A|2602
4V66|1|BB|G|2603
4V66|1|BB|U|2604
4V66|1|BB|U|2605
4V66|1|BB|C|2606

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain AP

Transfer RNA; tRNA

Chain BN

50S ribosomal protein L2