HL_4V66_093

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V66|1|BB|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_093 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.3708

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4V66|1|BB|C|2745
4V66|1|BB|U|2746
4V66|1|BB|G|2747
4V66|1|BB|A|2748
4V66|1|BB|A|2749
4V66|1|BB|A|2750
4V66|1|BB|G|2751
4V66|1|BB|C|2752
4V66|1|BB|A|2753
4V66|1|BB|U|2754
4V66|1|BB|C|2755
4V66|1|BB|U|2756
4V66|1|BB|A|2757
4V66|1|BB|A|2758
4V66|1|BB|G|2759

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BX

50S ribosomal protein L36