HL_4V67_003

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGA*G

Length

6 nucleotides

Bulged bases

4V67|1|AA|C|103

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_003 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3642

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V67|1|AA|C|102|||C
4V67|1|AA|C|103
4V67|1|AA|A|103|||A
4V67|1|AA|G|103|||B
4V67|1|AA|A|103|||A
*
4V67|1|AA|G|103|||B

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA