HL_4V67_068

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V67|1|BA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_068 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2154

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V67|1|BA|C|1064
4V67|1|BA|U|1065
4V67|1|BA|U|1066
4V67|1|BA|A|1067
4V67|1|BA|G|1068
4V67|1|BA|A|1069
4V67|1|BA|A|1070
4V67|1|BA|G|1071
4V67|1|BA|C|1072
4V67|1|BA|A|1073
4V67|1|BA|G|1074

Current chains

Chain BA

23S RRNA

Nearby chains

Chain AX

Bacterial peptide chain release factor 2 (RF-2)

Chain BK

50S ribosomal protein L11

Chain BQ

50S ribosomal protein L16