HL_4V67_165

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V67_165 not in the Motif Atlas

Homologous match to HL_5J7L_147

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V67|1|DA|C|462
4V67|1|DA|G|463
4V67|1|DA|U|464
4V67|1|DA|G|465
4V67|1|DA|A|466
4V67|1|DA|G|467

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DF

50S ribosomal protein L4