HL_4V68_001

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0782

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V68|1|AA|U|12
4V68|1|AA|U|13
4V68|1|AA|U|14
4V68|1|AA|G|15
4V68|1|AA|A|16
4V68|1|AA|U|17
4V68|1|AA|C|18
4V68|1|AA|C|19
4V68|1|AA|U|20
4V68|1|AA|G|21
4V68|1|AA|G|22

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S5

Chain AL

30S ribosomal protein S12