4V68 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V68_075 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V68_001 | No text annotation | ||
| HL_4V68_113 | No text annotation | ||
| HL_4V68_002 | No text annotation | ||
| HL_4V68_114 | No text annotation | ||
| HL_4V68_003 | GNRA | ||
| HL_4V68_004 | No text annotation | ||
| HL_4V68_115 | No text annotation | ||
| HL_4V68_005 | Mini UNCG | ||
| HL_4V68_006 | GNRA related | ||
| HL_4V68_007 | GNRA | ||
| HL_4V68_008 | No text annotation | ||
| HL_4V68_009 | UNCG | ||
| HL_4V68_116 | No text annotation | ||
| HL_4V68_010 | GNRA | ||
| HL_4V68_011 | UNCG | ||
| HL_4V68_117 | No text annotation | ||
| HL_4V68_012 | No text annotation | ||
| HL_4V68_126 | GNRA | ||
| HL_4V68_013 | No text annotation | ||
| HL_4V68_014 | GNRA-like with tWH | ||
| HL_4V68_015 | No text annotation | ||
| HL_4V68_016 | GNRA | ||
| HL_4V68_017 | No text annotation | ||
| HL_4V68_118 | No text annotation | ||
| HL_4V68_018 | Mini UNCG | ||
| HL_4V68_019 | GNRA | ||
| HL_4V68_020 | GNRA | ||
| HL_4V68_021 | No text annotation | ||
| HL_4V68_022 | GNRA | ||
| HL_4V68_023 | GNRA | ||
| HL_4V68_024 | T-loop related | ||
| HL_4V68_119 | No text annotation | ||
| HL_4V68_025 | No text annotation | ||
| HL_4V68_026 | No text annotation | ||
| HL_4V68_027 | GNRA | ||
| HL_4V68_028 | T-loop with 3 stacked bulged bases | ||
| HL_4V68_029 | No text annotation | ||
| HL_4V68_030 | UNCG | ||
| HL_4V68_031 | GNRA | ||
| HL_4V68_032 | tRNA D-loop | ||
| HL_4V68_033 | tRNA anticodon loop | ||
| HL_4V68_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V68_035 | No text annotation | ||
| HL_4V68_036 | No text annotation | ||
| HL_4V68_037 | T-loop with 2 stacked bulged bases | ||
| HL_4V68_038 | No text annotation | ||
| HL_4V68_039 | No text annotation | ||
| HL_4V68_120 | tRNA anticodon loop | ||
| HL_4V68_040 | T-loop with 2 stacked bulged bases | ||
| HL_4V68_041 | No text annotation | ||
| HL_4V68_042 | No text annotation | ||
| HL_4V68_043 | No text annotation | ||
| HL_4V68_044 | No text annotation | ||
| HL_4V68_045 | No text annotation | ||
| HL_4V68_046 | No text annotation | ||
| HL_4V68_047 | No text annotation | ||
| HL_4V68_048 | No text annotation | ||
| HL_4V68_049 | No text annotation | ||
| HL_4V68_050 | No text annotation | ||
| HL_4V68_051 | No text annotation | ||
| HL_4V68_052 | T-loop with unstacked turn | ||
| HL_4V68_053 | No text annotation | ||
| HL_4V68_121 | No text annotation | ||
| HL_4V68_054 | No text annotation | ||
| HL_4V68_055 | GNRA | ||
| HL_4V68_056 | GNRA | ||
| HL_4V68_057 | No text annotation | ||
| HL_4V68_058 | No text annotation | ||
| HL_4V68_059 | No text annotation | ||
| HL_4V68_060 | GNRA | ||
| HL_4V68_061 | No text annotation | ||
| HL_4V68_062 | No text annotation | ||
| HL_4V68_063 | No text annotation | ||
| HL_4V68_064 | UNCG variation | ||
| HL_4V68_065 | No text annotation | ||
| HL_4V68_122 | No text annotation | ||
| HL_4V68_066 | No text annotation | ||
| HL_4V68_067 | GNRA | ||
| HL_4V68_068 | No text annotation | ||
| HL_4V68_069 | Externally structured | ||
| HL_4V68_070 | No text annotation | ||
| HL_4V68_123 | No text annotation | ||
| HL_4V68_071 | No text annotation | ||
| HL_4V68_072 | GNRA | ||
| HL_4V68_073 | T-loop with 2 stacked bulged bases | ||
| HL_4V68_074 | No text annotation | ||
| HL_4V68_076 | No text annotation | ||
| HL_4V68_077 | Pseudoknot | ||
| HL_4V68_078 | No text annotation | ||
| HL_4V68_079 | No text annotation | ||
| HL_4V68_080 | Mini UNCG | ||
| HL_4V68_081 | No text annotation | ||
| HL_4V68_082 | No text annotation | ||
| HL_4V68_083 | UNCG | ||
| HL_4V68_084 | No text annotation | ||
| HL_4V68_085 | No text annotation | ||
| HL_4V68_086 | No text annotation | ||
| HL_4V68_087 | GNRA | ||
| HL_4V68_088 | GNRA | ||
| HL_4V68_089 | No text annotation | ||
| HL_4V68_090 | No text annotation | ||
| HL_4V68_091 | No text annotation | ||
| HL_4V68_092 | GNRA related | ||
| HL_4V68_093 | No text annotation | ||
| HL_4V68_094 | No text annotation | ||
| HL_4V68_095 | No text annotation | ||
| HL_4V68_124 | No text annotation | ||
| HL_4V68_096 | No text annotation | ||
| HL_4V68_127 | No text annotation | ||
| HL_4V68_097 | Pseudoknot geometry | ||
| HL_4V68_098 | No text annotation | ||
| HL_4V68_099 | GNRA | ||
| HL_4V68_100 | No text annotation | ||
| HL_4V68_101 | No text annotation | ||
| HL_4V68_102 | No text annotation | ||
| HL_4V68_103 | No text annotation | ||
| HL_4V68_104 | GNRA | ||
| HL_4V68_105 | GNRA | ||
| HL_4V68_106 | No text annotation | ||
| HL_4V68_107 | No text annotation | ||
| HL_4V68_108 | No text annotation | ||
| HL_4V68_109 | No text annotation | ||
| HL_4V68_110 | GNRA | ||
| HL_4V68_125 | No text annotation | ||
| HL_4V68_111 | No text annotation | ||
| HL_4V68_112 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V68_164 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V68_001 | Single bulged G | ||
| IL_4V68_002 | Single bulged A | ||
| IL_4V68_003 | No text annotation | ||
| IL_4V68_004 | Minor groove platform | ||
| IL_4V68_005 | Multiple bulged bases | ||
| IL_4V68_006 | Isolated non-canonical cWW pair | ||
| IL_4V68_007 | Multiple bulged bases | ||
| IL_4V68_008 | No text annotation | ||
| IL_4V68_170 | No text annotation | ||
| IL_4V68_009 | tWH-tWH-tHW-tHW | ||
| IL_4V68_188 | tWH-tWH-tHW-tHW | ||
| IL_4V68_010 | Isolated non-canonical cWW pair | ||
| IL_4V68_011 | Kink-turn with non-sequential stacking | ||
| IL_4V68_189 | No text annotation | ||
| IL_4V68_012 | No text annotation | ||
| IL_4V68_013 | C-loop | ||
| IL_4V68_014 | Single bulged U | ||
| IL_4V68_015 | C-loop | ||
| IL_4V68_016 | Single bulged G | ||
| IL_4V68_017 | No text annotation | ||
| IL_4V68_018 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V68_190 | No text annotation | ||
| IL_4V68_019 | No text annotation | ||
| IL_4V68_020 | SSU/LSU pseudoknot | ||
| IL_4V68_021 | Kink-turn related | ||
| IL_4V68_022 | No text annotation | ||
| IL_4V68_023 | tSH-tHW-tHS | ||
| IL_4V68_024 | Major groove platform | ||
| IL_4V68_025 | Major groove minor groove platform; mini C-loop | ||
| IL_4V68_026 | No text annotation | ||
| IL_4V68_171 | No text annotation | ||
| IL_4V68_027 | Major groove platform; stack outside cWW | ||
| IL_4V68_172 | Major groove platform with extra cWW | ||
| IL_4V68_028 | Major groove platform | ||
| IL_4V68_029 | Tandem non-canonical cWW pairs | ||
| IL_4V68_173 | Triple non-canonical cWW pairs | ||
| IL_4V68_030 | No text annotation | ||
| IL_4V68_031 | Kink-turn | ||
| IL_4V68_032 | Left turn | ||
| IL_4V68_174 | Other IL | ||
| IL_4V68_191 | tSH-tHW-tHS | ||
| IL_4V68_033 | tSH-tHW-tHS-cWW | ||
| IL_4V68_034 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V68_035 | Single bulged A | ||
| IL_4V68_036 | Single bulged G | ||
| IL_4V68_037 | Minor groove platform | ||
| IL_4V68_038 | Minor groove platform | ||
| IL_4V68_039 | Minor groove platform | ||
| IL_4V68_192 | Single stack bend | ||
| IL_4V68_040 | No text annotation | ||
| IL_4V68_193 | No text annotation | ||
| IL_4V68_041 | No text annotation | ||
| IL_4V68_042 | Single bulged U | ||
| IL_4V68_043 | Isolated cWS basepair | ||
| IL_4V68_044 | Minor groove platform | ||
| IL_4V68_175 | Isolated non-canonical cWW pair | ||
| IL_4V68_045 | Single bulged U | ||
| IL_4V68_046 | Isolated non-canonical cWW pair | ||
| IL_4V68_176 | No text annotation | ||
| IL_4V68_047 | No text annotation | ||
| IL_4V68_048 | No text annotation | ||
| IL_4V68_177 | No text annotation | ||
| IL_4V68_049 | 180 degree turn | ||
| IL_4V68_178 | Double sheared with non-canonical cWW | ||
| IL_4V68_050 | Double sheared | ||
| IL_4V68_051 | No text annotation | ||
| IL_4V68_052 | No text annotation | ||
| IL_4V68_053 | No text annotation | ||
| IL_4V68_054 | Isolated non-canonical cWW pair | ||
| IL_4V68_055 | Decoding loop related | ||
| IL_4V68_056 | Isolated non-canonical cWW pair | ||
| IL_4V68_057 | Double sheared | ||
| IL_4V68_058 | UAA/GAN variation | ||
| IL_4V68_059 | Isolated non-canonical cWW pair | ||
| IL_4V68_179 | No text annotation | ||
| IL_4V68_060 | No text annotation | ||
| IL_4V68_061 | Triple sheared with non-canonical cWW | ||
| IL_4V68_062 | Single bulged A | ||
| IL_4V68_063 | Minor groove platform | ||
| IL_4V68_064 | Kink-turn | ||
| IL_4V68_065 | Single stack bend | ||
| IL_4V68_066 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V68_067 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V68_068 | Major groove platform | ||
| IL_4V68_194 | No text annotation | ||
| IL_4V68_069 | No text annotation | ||
| IL_4V68_180 | Tandem non-canonical cWW pairs | ||
| IL_4V68_181 | No text annotation | ||
| IL_4V68_195 | No text annotation | ||
| IL_4V68_070 | tSH-tHW-tHS | ||
| IL_4V68_071 | tSH-tHW-tHS-cWW | ||
| IL_4V68_182 | No text annotation | ||
| IL_4V68_196 | No text annotation | ||
| IL_4V68_072 | No text annotation | ||
| IL_4V68_073 | No text annotation | ||
| IL_4V68_074 | No text annotation | ||
| IL_4V68_075 | AAA cross-strand stack | ||
| IL_4V68_076 | No text annotation | ||
| IL_4V68_077 | tHW-tHW cross-strand stack | ||
| IL_4V68_078 | Single bulged A | ||
| IL_4V68_079 | Single bulged G | ||
| IL_4V68_080 | Triple sheared | ||
| IL_4V68_081 | Major groove platform with extra cWW | ||
| IL_4V68_082 | Multiple bulged bases | ||
| IL_4V68_083 | Single stack bend | ||
| IL_4V68_084 | Intercalated cWW | ||
| IL_4V68_085 | No text annotation | ||
| IL_4V68_086 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V68_087 | Minor groove platform | ||
| IL_4V68_088 | C-loop | ||
| IL_4V68_089 | Isolated cWS basepair | ||
| IL_4V68_090 | No text annotation | ||
| IL_4V68_091 | No text annotation | ||
| IL_4V68_092 | Single bulged C | ||
| IL_4V68_093 | UAA/GAN | ||
| IL_4V68_094 | SSU/LSU pseudoknot | ||
| IL_4V68_095 | Single bulged U | ||
| IL_4V68_096 | Kink-turn related | ||
| IL_4V68_097 | No text annotation | ||
| IL_4V68_098 | Isolated non-canonical cWW pair | ||
| IL_4V68_099 | No text annotation | ||
| IL_4V68_197 | No text annotation | ||
| IL_4V68_100 | No text annotation | ||
| IL_4V68_101 | Stack and bulge | ||
| IL_4V68_102 | Isolated cWS basepair | ||
| IL_4V68_103 | No text annotation | ||
| IL_4V68_104 | Kink-turn | ||
| IL_4V68_105 | Single bulged A | ||
| IL_4V68_106 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V68_107 | Major groove platform; stack outside cWW | ||
| IL_4V68_183 | C-loop | ||
| IL_4V68_108 | C-loop with extra cWW pair | ||
| IL_4V68_109 | UAA/GAN | ||
| IL_4V68_110 | tSH-tHW-tHS | ||
| IL_4V68_111 | No text annotation | ||
| IL_4V68_112 | UAA/GAN | ||
| IL_4V68_113 | Isolated tWW turn | ||
| IL_4V68_114 | tSH-tHW | ||
| IL_4V68_115 | Single stack bend | ||
| IL_4V68_116 | UAA/GAN variation | ||
| IL_4V68_117 | No text annotation | ||
| IL_4V68_184 | No text annotation | ||
| IL_4V68_185 | Tandem non-canonical cWW pairs | ||
| IL_4V68_118 | Single bulged A | ||
| IL_4V68_119 | No text annotation | ||
| IL_4V68_120 | Isolated tWW turn | ||
| IL_4V68_121 | Major groove platform; stack outside cWW | ||
| IL_4V68_186 | No text annotation | ||
| IL_4V68_122 | Intercalated tWH | ||
| IL_4V68_123 | tSH-tSH-tHH-tHS | ||
| IL_4V68_124 | Single bulged A | ||
| IL_4V68_125 | Kink-turn related | ||
| IL_4V68_126 | Minor groove platform, major groove intercalation | ||
| IL_4V68_127 | Major groove intercalation | ||
| IL_4V68_128 | Minor groove platform | ||
| IL_4V68_129 | UAA/GAN with extra stack | ||
| IL_4V68_130 | Triple sheared | ||
| IL_4V68_131 | Bulged stacked bases | ||
| IL_4V68_132 | No text annotation | ||
| IL_4V68_133 | Major groove platform | ||
| IL_4V68_134 | No text annotation | ||
| IL_4V68_135 | Single bulged U | ||
| IL_4V68_136 | Minor groove platform | ||
| IL_4V68_137 | Isolated tHS basepair with bulges | ||
| IL_4V68_138 | No text annotation | ||
| IL_4V68_139 | Isolated non-canonical cWW pair | ||
| IL_4V68_140 | Multiple bulged bases | ||
| IL_4V68_141 | No text annotation | ||
| IL_4V68_142 | No text annotation | ||
| IL_4V68_143 | Isolated tHS basepair with bulges | ||
| IL_4V68_144 | Double sheared | ||
| IL_4V68_145 | Single bulged U | ||
| IL_4V68_146 | Single stack bend | ||
| IL_4V68_147 | Major groove platform | ||
| IL_4V68_148 | Major groove platform | ||
| IL_4V68_149 | Major groove minor groove platform with extra cWW | ||
| IL_4V68_150 | Double sheared with non-canonical cWW | ||
| IL_4V68_151 | Major groove platform | ||
| IL_4V68_152 | Isolated non-canonical cWW with bulges | ||
| IL_4V68_153 | No text annotation | ||
| IL_4V68_154 | Major groove platform with intercalation | ||
| IL_4V68_155 | Single bulged A | ||
| IL_4V68_156 | tSH-tHS-tHW | ||
| IL_4V68_157 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V68_158 | C-loop | ||
| IL_4V68_159 | No text annotation | ||
| IL_4V68_160 | Multiple bulged bases | ||
| IL_4V68_161 | UAA/GAN with extra cWW | ||
| IL_4V68_187 | No text annotation | ||
| IL_4V68_162 | Single bulged C | ||
| IL_4V68_163 | No text annotation | ||
| IL_4V68_165 | Major groove intercalation | ||
| IL_4V68_166 | No text annotation | ||
| IL_4V68_198 | Major groove minor groove platform; mini C-loop | ||
| IL_4V68_167 | No text annotation | ||
| IL_4V68_168 | Symmetric double minor groove platform | ||
| IL_4V68_169 | Bacterial 5S Loop E |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V68_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V68_001 | No text annotation | ||
| J3_4V68_027 | No text annotation | ||
| J3_4V68_002 | No text annotation | ||
| J3_4V68_028 | No text annotation | ||
| J3_4V68_003 | No text annotation | ||
| J3_4V68_004 | No text annotation | ||
| J3_4V68_005 | No text annotation | ||
| J3_4V68_029 | No text annotation | ||
| J3_4V68_006 | No text annotation | ||
| J3_4V68_007 | No text annotation | ||
| J3_4V68_008 | No text annotation | ||
| J3_4V68_030 | No text annotation | ||
| J3_4V68_009 | No text annotation | ||
| J3_4V68_010 | No text annotation | ||
| J3_4V68_011 | No text annotation | ||
| J3_4V68_013 | No text annotation | ||
| J3_4V68_031 | No text annotation | ||
| J3_4V68_032 | No text annotation | ||
| J3_4V68_014 | No text annotation | ||
| J3_4V68_039 | No text annotation | ||
| J3_4V68_015 | No text annotation | ||
| J3_4V68_033 | No text annotation | ||
| J3_4V68_016 | No text annotation | ||
| J3_4V68_017 | No text annotation | ||
| J3_4V68_018 | No text annotation | ||
| J3_4V68_034 | No text annotation | ||
| J3_4V68_019 | No text annotation | ||
| J3_4V68_020 | No text annotation | ||
| J3_4V68_021 | No text annotation | ||
| J3_4V68_035 | No text annotation | ||
| J3_4V68_022 | No text annotation | ||
| J3_4V68_036 | No text annotation | ||
| J3_4V68_023 | No text annotation | ||
| J3_4V68_024 | No text annotation | ||
| J3_4V68_025 | No text annotation | ||
| J3_4V68_026 | No text annotation | ||
| J3_4V68_037 | No text annotation | ||
| J3_4V68_038 | No text annotation | ||
| J4_4V68_001 | No text annotation | ||
| J4_4V68_002 | No text annotation | ||
| J4_4V68_003 | No text annotation | ||
| J4_4V68_004 | tRNA junction | ||
| J4_4V68_018 | No text annotation | ||
| J4_4V68_005 | tRNA junction | ||
| J4_4V68_006 | No text annotation | ||
| J4_4V68_007 | No text annotation | ||
| J4_4V68_008 | No text annotation | ||
| J4_4V68_009 | No text annotation | ||
| J4_4V68_010 | No text annotation | ||
| J4_4V68_011 | No text annotation | ||
| J4_4V68_012 | No text annotation | ||
| J4_4V68_013 | No text annotation | ||
| J4_4V68_014 | No text annotation | ||
| J4_4V68_015 | No text annotation | ||
| J4_4V68_016 | No text annotation | ||
| J4_4V68_017 | No text annotation | ||
| J5_4V68_001 | No text annotation | ||
| J5_4V68_002 | No text annotation | ||
| J5_4V68_010 | No text annotation | ||
| J5_4V68_003 | No text annotation | ||
| J5_4V68_011 | No text annotation | ||
| J5_4V68_004 | No text annotation | ||
| J5_4V68_005 | No text annotation | ||
| J5_4V68_006 | No text annotation | ||
| J5_4V68_007 | No text annotation | ||
| J5_4V68_008 | No text annotation | ||
| J5_4V68_009 | No text annotation | ||
| J6_4V68_001 | No text annotation | ||
| J6_4V68_002 | No text annotation | ||
| J7_4V68_001 | No text annotation | ||
| J8_4V68_001 | No text annotation |
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