HL_4V68_020

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0721

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V68|1|AA|C|897
4V68|1|AA|G|898
4V68|1|AA|C|899
4V68|1|AA|A|900
4V68|1|AA|A|901
4V68|1|AA|G|902

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA