HL_4V68_028

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_028 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1296

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V68|1|AA|C|1314
4V68|1|AA|U|1315
4V68|1|AA|G|1316
4V68|1|AA|C|1317
4V68|1|AA|A|1318
4V68|1|AA|A|1319
4V68|1|AA|C|1320
4V68|1|AA|C|1321
4V68|1|AA|C|1322
4V68|1|AA|G|1323

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19