HL_4V68_048
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V68_048 not in the Motif Atlas
- Homologous match to HL_5J7L_141
- Geometric discrepancy: 0.0824
- The information below is about HL_5J7L_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V68|1|BA|C|246
4V68|1|BA|G|247
4V68|1|BA|G|248
4V68|1|BA|C|249
4V68|1|BA|G|250
4V68|1|BA|A|251
4V68|1|BA|G|252
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L28
- Chain B8
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L15
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