HL_4V68_054

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V68|1|BA|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_054 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.116

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V68|1|BA|G|410
4V68|1|BA|G|411
4V68|1|BA|A|412
4V68|1|BA|C|413
4V68|1|BA|C|414
4V68|1|BA|A|415
4V68|1|BA|C|416
4V68|1|BA|C|417

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15