HL_4V68_068

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_068 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0917

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V68|1|BA|G|978
4V68|1|BA|G|979
4V68|1|BA|A|980
4V68|1|BA|A|981
4V68|1|BA|C|982
4V68|1|BA|A|983
4V68|1|BA|A|984
4V68|1|BA|C|985

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BU

50S ribosomal protein L20