HL_4V68_071

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4V68|1|BA|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_071 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2473

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V68|1|BA|G|1170
4V68|1|BA|G|1171
4V68|1|BA|G|1173
4V68|1|BA|A|1174
4V68|1|BA|U|1175
4V68|1|BA|G|1176
4V68|1|BA|A|1177
4V68|1|BA|C|1178
4V68|1|BA|C|1179

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L21