HL_4V68_077

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V68|1|BA|U|1453, 4V68|1|BA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_077 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.458

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V68|1|BA|C|1450|||A
4V68|1|BA|C|1451
4V68|1|BA|A|1452
4V68|1|BA|U|1453
4V68|1|BA|G|1455
4V68|1|BA|G|1456
4V68|1|BA|A|1457
4V68|1|BA|C|1458
4V68|1|BA|G|1459
4V68|1|BA|A|1460
4V68|1|BA|G|1461

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17