HL_4V68_094

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V68|1|BA|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_094 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0722

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V68|1|BA|C|2248
4V68|1|BA|U|2249
4V68|1|BA|G|2250
4V68|1|BA|G|2251
4V68|1|BA|G|2252
4V68|1|BA|G|2253
4V68|1|BA|C|2254
4V68|1|BA|G|2255
4V68|1|BA|G|2256

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16